| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is ybaZ [C]
Identifier: 78048458
GI number: 78048458
Start: 3304198
End: 3304605
Strand: Reverse
Name: ybaZ [C]
Synonym: XCV2902
Alternate gene names: 78048458
Gene position: 3304605-3304198 (Counterclockwise)
Preceding gene: 78048459
Following gene: 78048457
Centisome position: 63.81
GC content: 72.3
Gene sequence:
>408_bases ATGCCCACATCTCGCCATCCAACACCGCGCGGCACCGCCAGCCCGCCTGCGCGCGCAGGCTCCAAGAGCGCGTCACTGTC CGGCGAGCAGGCGCGGCTGCGGATTCTTCAGGCGATCGGCGCAATTCCCGTGGGCGAGGTCGCCGGTTATGGGGAAGTTG CCCGGCGCGCGGGCCTGCCGGGCCGTGCGCGACTGGTGGCACGCGTGCTCAGCGGCAACGACGACCCGCAGCTGCCCTGG CACCGCGTATTGCGCAGCGACGGCCGGATTGCCTTGCCCGAAGGCTCGGCAGGCTACCGCGAGCAATGCCAGCGCCTGCG CGACGAGGGCGTCCAGGTGGAACGTGGCCGTGTGCGCCGGGCCAGCGCCGCGCAGCGGCTGGATGCGGCCGTGTGGGGAC CTTCATAA
Upstream 100 bases:
>100_bases CGCACCTCAAGCCCTCTCCCGGGAGCAGAGGGCTTGCAACCTTCCCCTCGCGTGCAGGGCGATCCGCACACGCACGCTCA TCAGCTGGCATGCTTGTGCG
Downstream 100 bases:
>100_bases GCCTGCCGTTATCATCGGCAGCATTACGAAGGAAGCCGCCATGCCTCAATTGCCGCCCGTCACCAAAGCATTACTGATCG CCAACATCGGCTTGTTCCTG
Product: putative 6-O-methylguanine-DNA methyltransferase
Products: NA
Alternate protein names: 6-O-Methylguanine DNA Methyltransferase Protein; DNA-Methyltransferase
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MPTSRHPTPRGTASPPARAGSKSASLSGEQARLRILQAIGAIPVGEVAGYGEVARRAGLPGRARLVARVLSGNDDPQLPW HRVLRSDGRIALPEGSAGYREQCQRLRDEGVQVERGRVRRASAAQRLDAAVWGPS
Sequences:
>Translated_135_residues MPTSRHPTPRGTASPPARAGSKSASLSGEQARLRILQAIGAIPVGEVAGYGEVARRAGLPGRARLVARVLSGNDDPQLPW HRVLRSDGRIALPEGSAGYREQCQRLRDEGVQVERGRVRRASAAQRLDAAVWGPS >Mature_134_residues PTSRHPTPRGTASPPARAGSKSASLSGEQARLRILQAIGAIPVGEVAGYGEVARRAGLPGRARLVARVLSGNDDPQLPWH RVLRSDGRIALPEGSAGYREQCQRLRDEGVQVERGRVRRASAAQRLDAAVWGPS
Specific function: Unknown
COG id: COG3695
COG function: function code L; Predicted methylated DNA-protein cysteine methyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14405; Mature: 14274
Theoretical pI: Translated: 12.00; Mature: 12.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTSRHPTPRGTASPPARAGSKSASLSGEQARLRILQAIGAIPVGEVAGYGEVARRAGLP CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCCC GRARLVARVLSGNDDPQLPWHRVLRSDGRIALPEGSAGYREQCQRLRDEGVQVERGRVRR HHHHHHHHHHCCCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCCCHHHHH ASAAQRLDAAVWGPS HHHHHHHHHHCCCCC >Mature Secondary Structure PTSRHPTPRGTASPPARAGSKSASLSGEQARLRILQAIGAIPVGEVAGYGEVARRAGLP CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCCC GRARLVARVLSGNDDPQLPWHRVLRSDGRIALPEGSAGYREQCQRLRDEGVQVERGRVRR HHHHHHHHHHCCCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCCCHHHHH ASAAQRLDAAVWGPS HHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA