| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is bdhA [H]
Identifier: 78047762
GI number: 78047762
Start: 2536116
End: 2536874
Strand: Reverse
Name: bdhA [H]
Synonym: XCV2206
Alternate gene names: 78047762
Gene position: 2536874-2536116 (Counterclockwise)
Preceding gene: 78047768
Following gene: 78047758
Centisome position: 48.99
GC content: 66.93
Gene sequence:
>759_bases ATGCGCAGCATCCTGATCACCGGCGCGGGCAGCGGCATTGGCGCCGGTATCGCCAGCCAACTGGCGGCCGATGGCCATCA TCTACTCGTCAGCGATGTGCAGCTGGCGGACGCCGAGCGCACGGCCGAGGCGTTGCGCCAGGCAGGCGCCTCGGCCGAGG CGCTGGCGTTGGACGTGACCGATGCAGACAGCATTGCGCAGGCACTGGCCAACGCATCACGCGCCCCGCAGGTACTGGTG AACAATGCCGGCCTGCAGCATGTGGCCACACTGGAGGAGTTCCCGATGCAGCAGTGGGCGCTGCTGGTGGATGTCATGCT CACCGGCGCCGCACGCCTCAGTCGCGCCGTGCTGCCCGGCATGCGTGCAGCCGGCTATGGCCGCATCCTCAATATCGGCA GCATCCACTCGCTGGTGGCCAGCCCATACAAAAGTGCGTATGTCGCCGCCAAGCATGGCCTGGTCGGCCTGGCCAAGGTC ATCGCGCTGGAAACCGCCGATTGCGACATCACCGTCAACACGCTCTGCCCCAGCTATGTGCGCACACCGCTGGTGGAGCG GCAGATTGCCGATCAGGCGCGCACCCGCGGCATCGCCGAGGACGCGGTGGTGCGCGATGTGATGCTCAAGCCGATGCCCA AGGGCGCCTTCATCGAGTACGACGAGCTAGCCGGCACGGTGGCGTTTCTGATGTCGCATGCCGCGCGCAACATCACCGGG CAAGCCATCGCCATCGACGGCGGCTGGACGGCCCAATGA
Upstream 100 bases:
>100_bases AACGCGCGCGCGCCATGCAGGCGACCGTTTCGCTGCACTCGGCTAGGCTGGCGATCCGCGTGACCGCTCCCGGCCGCGCA CCACTTCACGAGGACATCCG
Downstream 100 bases:
>100_bases TCACGCTGGCGAAATTTTGACCAGCCCTCGCGCATGCCGGATGGTGCAAGGGGTGCGCGGACTTGTCCACAGACTTGCGC AGCGTCCATCCACAGGGGGT
Product: 3-hydroxybutyrate dehydrogenase
Products: NA
Alternate protein names: BDH; 3-hydroxybutyrate dehydrogenase; 3-HBDH [H]
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MRSILITGAGSGIGAGIASQLAADGHHLLVSDVQLADAERTAEALRQAGASAEALALDVTDADSIAQALANASRAPQVLV NNAGLQHVATLEEFPMQQWALLVDVMLTGAARLSRAVLPGMRAAGYGRILNIGSIHSLVASPYKSAYVAAKHGLVGLAKV IALETADCDITVNTLCPSYVRTPLVERQIADQARTRGIAEDAVVRDVMLKPMPKGAFIEYDELAGTVAFLMSHAARNITG QAIAIDGGWTAQ
Sequences:
>Translated_252_residues MRSILITGAGSGIGAGIASQLAADGHHLLVSDVQLADAERTAEALRQAGASAEALALDVTDADSIAQALANASRAPQVLV NNAGLQHVATLEEFPMQQWALLVDVMLTGAARLSRAVLPGMRAAGYGRILNIGSIHSLVASPYKSAYVAAKHGLVGLAKV IALETADCDITVNTLCPSYVRTPLVERQIADQARTRGIAEDAVVRDVMLKPMPKGAFIEYDELAGTVAFLMSHAARNITG QAIAIDGGWTAQ >Mature_252_residues MRSILITGAGSGIGAGIASQLAADGHHLLVSDVQLADAERTAEALRQAGASAEALALDVTDADSIAQALANASRAPQVLV NNAGLQHVATLEEFPMQQWALLVDVMLTGAARLSRAVLPGMRAAGYGRILNIGSIHSLVASPYKSAYVAAKHGLVGLAKV IALETADCDITVNTLCPSYVRTPLVERQIADQARTRGIAEDAVVRDVMLKPMPKGAFIEYDELAGTVAFLMSHAARNITG QAIAIDGGWTAQ
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=28.2258064516129, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=28.515625, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI66933014, Length=195, Percent_Identity=31.2820512820513, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=33.6842105263158, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI223718074, Length=167, Percent_Identity=35.9281437125749, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=28.2868525896414, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=28.9340101522843, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI4504505, Length=187, Percent_Identity=29.9465240641711, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=27.5675675675676, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI142976729, Length=191, Percent_Identity=28.7958115183246, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=28.3400809716599, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=25.0996015936255, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=27.2, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI19743808, Length=188, Percent_Identity=31.9148936170213, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI126723191, Length=175, Percent_Identity=29.1428571428571, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI40807363, Length=231, Percent_Identity=26.8398268398268, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI150247226, Length=194, Percent_Identity=29.8969072164948, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=23.6220472440945, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI20149619, Length=204, Percent_Identity=28.4313725490196, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=21.6931216931217, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI4503301, Length=236, Percent_Identity=23.3050847457627, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=34.7826086956522, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.9397590361446, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=30.8, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=28.968253968254, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=27.0916334661355, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=32.9365079365079, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=29.0196078431373, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786701, Length=183, Percent_Identity=28.4153005464481, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=26.6932270916335, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787820, Length=140, Percent_Identity=32.1428571428571, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=32.6612903225806, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=29.9212598425197, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=27.4509803921569, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17568967, Length=184, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI193203115, Length=190, Percent_Identity=27.3684210526316, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=28.8770053475936, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115534660, Length=193, Percent_Identity=27.4611398963731, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=27.1653543307087, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17507613, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI32563809, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=25.6544502617801, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=24, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=28.4644194756554, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=24.8062015503876, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=187, Percent_Identity=34.7593582887701, Blast_Score=96, Evalue=8e-21, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=29.8804780876494, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=33.9920948616601, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=30.5882352941176, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI18859837, Length=261, Percent_Identity=28.3524904214559, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=27.843137254902, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=29.0196078431373, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=27.0916334661355, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24649181, Length=186, Percent_Identity=30.1075268817204, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21358495, Length=248, Percent_Identity=23.7903225806452, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21356301, Length=231, Percent_Identity=28.1385281385281, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357673, Length=189, Percent_Identity=27.5132275132275, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011294 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.30 [H]
Molecular weight: Translated: 26245; Mature: 26245
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSILITGAGSGIGAGIASQLAADGHHLLVSDVQLADAERTAEALRQAGASAEALALDVT CCEEEEEECCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECC DADSIAQALANASRAPQVLVNNAGLQHVATLEEFPMQQWALLVDVMLTGAARLSRAVLPG CHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC MRAAGYGRILNIGSIHSLVASPYKSAYVAAKHGLVGLAKVIALETADCDITVNTLCPSYV CCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHCCHHHH RTPLVERQIADQARTRGIAEDAVVRDVMLKPMPKGAFIEYDELAGTVAFLMSHAARNITG HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC QAIAIDGGWTAQ CEEEECCCCCCC >Mature Secondary Structure MRSILITGAGSGIGAGIASQLAADGHHLLVSDVQLADAERTAEALRQAGASAEALALDVT CCEEEEEECCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECC DADSIAQALANASRAPQVLVNNAGLQHVATLEEFPMQQWALLVDVMLTGAARLSRAVLPG CHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC MRAAGYGRILNIGSIHSLVASPYKSAYVAAKHGLVGLAKVIALETADCDITVNTLCPSYV CCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHCCHHHH RTPLVERQIADQARTRGIAEDAVVRDVMLKPMPKGAFIEYDELAGTVAFLMSHAARNITG HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC QAIAIDGGWTAQ CEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9922248; 11481431 [H]