Click here to switch to the map view.

The map label for this gene is nodV [H]

Identifier: 78047661

GI number: 78047661

Start: 2410450

End: 2411526

Strand: Reverse

Name: nodV [H]

Synonym: XCV2105

Alternate gene names: 78047661

Gene position: 2411526-2410450 (Counterclockwise)

Preceding gene: 78047662

Following gene: 78047660

Centisome position: 46.57

GC content: 66.85

Gene sequence:

>1077_bases
ATGCGCATGACCTCTCTCTTCCGCTCGCCACCCACGCGTACCGACCTGCTCGGCATGGTCGGGCTGGTGGCGGGCATGGC
AGCGATCTTCGTGGCCGATACCTTCACCGACTATGCGGTGGCGGCAGCCTTGTTCTATACGTTGGTGGTGCTGCTGTCGG
TACGCCTGCTGACGCGCACGGGCGTAGTGCTGCTGGCGGCCACCTGCCTGGCGCTGATCGTGCTCAGCTTCCATCTCACC
CCGGCCGGCAGCTACCGCGTGGGCGTGATCAACTCCTGCATCAGTGCGGTGGTGGTGGCGGTCACCACCTATCTGGCGGT
GCAGATGGAAGCGGCCAAGGCGAGCGCACATGCCGCACAGGCACGGCTGTTGCGGCTCACCCGCAGCGGCAGCATGGGCG
GGCTAGCCGCATCGATCGCCCACGAAGTCAATCAACCCTTGGCCGCCATCGTGACCAGTGGCAATGCCTGCCAGCGCTGG
CTGGCGCAGCAACCGCCCAACCTGGCCAAGGCCGATGCAGCACTGGAGCGCATGCTCGCCGACGCCGGCCGCGCCAGCGC
CATCATCGCGCGCATGCGTGCATTGGCGCGTGGCGAAGCCAGCCAACGCCAGCCGCTGGATTTGAACCGCACCGTGCTCG
ACATGATTGCCCTCACCCGTGGCGAAACCGAGCGCCATGGCATCGCGCTGTCGCTGGAGCTGGACCCTGCCCTGCCCGCG
GTGCTGGCCGATGGCGTACAGATCCAGCAGGTCATCGGCAATCTGTTGCTCAACGCCGTGGAGGCACTGGCGACCTTGCC
GGACGAGGCGCGCAGCATCCATGTACGCTCGCACACCGATGGTGGGTGGGCATGCCTGTGCATCGACGACACCGGCCCAG
GCTTGTCCGATGACGCACTGGCGCATGTATTCGAAGCATTCTGGGGCACCAAGGACGATGGCATGGGCATTGGCTTGAGC
ATCAGCCGCACCATCATGGAAGCCAACGGCGGGCAGATCTGGGCCGAGCCGGCCGGTGTACGCGGCGCGCGCTTCGGCCT
GCGTCTGCCCCTGGTCGCGACGGAGCGCAGGCCATGA

Upstream 100 bases:

>100_bases
CCAGCGGCCCAGACGCCCAAGCCCGCGGCTCCATGAATCACGCACCGCAGCCAGCGCCGGTTGTGTAACGGCGGCGCCGC
CAGCTGAGACAATCGCCGCC

Downstream 100 bases:

>100_bases
GCGAGCCGGCCCCGGTGGTGTATCTCATCGACGACGATGCCTCGATGCGCGCTGCACTGGAGGATCTGTTCGCCTCGGTC
GGCTTGCAGGTCTACGCGTT

Product: two-component system sensor kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MRMTSLFRSPPTRTDLLGMVGLVAGMAAIFVADTFTDYAVAAALFYTLVVLLSVRLLTRTGVVLLAATCLALIVLSFHLT
PAGSYRVGVINSCISAVVVAVTTYLAVQMEAAKASAHAAQARLLRLTRSGSMGGLAASIAHEVNQPLAAIVTSGNACQRW
LAQQPPNLAKADAALERMLADAGRASAIIARMRALARGEASQRQPLDLNRTVLDMIALTRGETERHGIALSLELDPALPA
VLADGVQIQQVIGNLLLNAVEALATLPDEARSIHVRSHTDGGWACLCIDDTGPGLSDDALAHVFEAFWGTKDDGMGIGLS
ISRTIMEANGGQIWAEPAGVRGARFGLRLPLVATERRP

Sequences:

>Translated_358_residues
MRMTSLFRSPPTRTDLLGMVGLVAGMAAIFVADTFTDYAVAAALFYTLVVLLSVRLLTRTGVVLLAATCLALIVLSFHLT
PAGSYRVGVINSCISAVVVAVTTYLAVQMEAAKASAHAAQARLLRLTRSGSMGGLAASIAHEVNQPLAAIVTSGNACQRW
LAQQPPNLAKADAALERMLADAGRASAIIARMRALARGEASQRQPLDLNRTVLDMIALTRGETERHGIALSLELDPALPA
VLADGVQIQQVIGNLLLNAVEALATLPDEARSIHVRSHTDGGWACLCIDDTGPGLSDDALAHVFEAFWGTKDDGMGIGLS
ISRTIMEANGGQIWAEPAGVRGARFGLRLPLVATERRP
>Mature_358_residues
MRMTSLFRSPPTRTDLLGMVGLVAGMAAIFVADTFTDYAVAAALFYTLVVLLSVRLLTRTGVVLLAATCLALIVLSFHLT
PAGSYRVGVINSCISAVVVAVTTYLAVQMEAAKASAHAAQARLLRLTRSGSMGGLAASIAHEVNQPLAAIVTSGNACQRW
LAQQPPNLAKADAALERMLADAGRASAIIARMRALARGEASQRQPLDLNRTVLDMIALTRGETERHGIALSLELDPALPA
VLADGVQIQQVIGNLLLNAVEALATLPDEARSIHVRSHTDGGWACLCIDDTGPGLSDDALAHVFEAFWGTKDDGMGIGLS
ISRTIMEANGGQIWAEPAGVRGARFGLRLPLVATERRP

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1790436, Length=239, Percent_Identity=27.1966527196653, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788549, Length=235, Percent_Identity=29.7872340425532, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081816, Length=261, Percent_Identity=28.735632183908, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI48994928, Length=236, Percent_Identity=27.5423728813559, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693157, Length=289, Percent_Identity=24.2214532871972, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788393, Length=230, Percent_Identity=26.5217391304348, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 37718; Mature: 37718

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMTSLFRSPPTRTDLLGMVGLVAGMAAIFVADTFTDYAVAAALFYTLVVLLSVRLLTRT
CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVLLAATCLALIVLSFHLTPAGSYRVGVINSCISAVVVAVTTYLAVQMEAAKASAHAAQ
HHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLLRLTRSGSMGGLAASIAHEVNQPLAAIVTSGNACQRWLAQQPPNLAKADAALERMLA
HHHHHHHCCCCCCHHHHHHHHHHCCCCEEHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
DAGRASAIIARMRALARGEASQRQPLDLNRTVLDMIALTRGETERHGIALSLELDPALPA
HCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHH
VLADGVQIQQVIGNLLLNAVEALATLPDEARSIHVRSHTDGGWACLCIDDTGPGLSDDAL
HHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCEEEEEEECCCCCCCHHHH
AHVFEAFWGTKDDGMGIGLSISRTIMEANGGQIWAEPAGVRGARFGLRLPLVATERRP
HHHHHHHCCCCCCCCEECHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECEEECCCCC
>Mature Secondary Structure
MRMTSLFRSPPTRTDLLGMVGLVAGMAAIFVADTFTDYAVAAALFYTLVVLLSVRLLTRT
CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVLLAATCLALIVLSFHLTPAGSYRVGVINSCISAVVVAVTTYLAVQMEAAKASAHAAQ
HHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLLRLTRSGSMGGLAASIAHEVNQPLAAIVTSGNACQRWLAQQPPNLAKADAALERMLA
HHHHHHHCCCCCCHHHHHHHHHHCCCCEEHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
DAGRASAIIARMRALARGEASQRQPLDLNRTVLDMIALTRGETERHGIALSLELDPALPA
HCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHH
VLADGVQIQQVIGNLLLNAVEALATLPDEARSIHVRSHTDGGWACLCIDDTGPGLSDDAL
HHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCEEEEEEECCCCCCCHHHH
AHVFEAFWGTKDDGMGIGLSISRTIMEANGGQIWAEPAGVRGARFGLRLPLVATERRP
HHHHHHHCCCCCCCCEECHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]