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The map label for this gene is yddU [C]

Identifier: 78047658

GI number: 78047658

Start: 2396784

End: 2398595

Strand: Reverse

Name: yddU [C]

Synonym: XCV2102

Alternate gene names: 78047658

Gene position: 2398595-2396784 (Counterclockwise)

Preceding gene: 78047660

Following gene: 78047645

Centisome position: 46.32

GC content: 63.8

Gene sequence:

>1812_bases
GTGATCTTCGACACGGAACCCGATGCCATGACGCTTGCCCCGGACGACAAACCGCAGGATCGCCACTTCGACTGGTCAGG
CGTGCCGATCGACCTGGGCGGCATGGAGCCCCTGGAGCAAATCGCACGATTGCTCTGCCATGCCCTGGTGGCACCGGCTG
CTGCGCTGACCATCACGGAGGGCGGGCGCCTGCGTGTGCTGGCAGCGCGTGGCATCAGCAGCAGTCATGTCAGGCAGGCC
ATGGAGCTGTGCCAGCAGGTTCCGCCAGCGCCAAATGGCGTGACCGAGTTGATCGAGCATGCAACGCTTGCGCAAATTCA
ACTCGGCGATGCCGCGTTCCCCGGCTTGCCCGCGCGCTTCATCGCCTGCGTGCCCGTGGGTGCGCCGCAGACAGGAATTG
CCGGAACCCTGTGCGTGATCGACACGCGCGAGCGACGGCTGGCAAGCCAGGAGCATCAGCAACTGCTGATGTTCGCCAAC
GTGGCTGCCGCACAGCTGGAACTGCAGTTCGGTGCGGGCCGACGCGAGCCGCACAGCGGCTTGCTCAATACGCGTCAGCT
GCAATCGGATCTGGACGCCCTCGCCTTCGGCAGCCATAGCGTGCCTACCATTGCCGCGTTCATTGAGGTCTACGACACCC
AGGCCGCCAACGAGGCGCGCCAGGCGCTGGGCATGCAGCCGCTGGAAGAGCTGGTTCGCCACGCCAGCTACGTGTTGACC
CGCGCCTTGCGCGGCAAGGCCACCGTCTACCACGTGGCCTCGATGCGCTTTGCGTTCTTTCTGCTCAACTCCGCGCCGGA
CGAGATGGAAGACCTGCTGCTGGATCTGCGCGACATGCTGCACAAGCCGGTGGATGCCGCCGGCGTACCGATGTCGCTGA
CCTTTCATGCCGGTGTGGTGCGCTTCGCCCCGCAGCAGCCGGACACCAACGATGTGATGCGCAAGGGCCTGGTGGCGCTG
GGCGATGCCATCAACAACCATGCCATCGTGTGCTGGTACAGCGCTTCGCACGACGATGCGATTCAACGCTCGTACCGCCT
GGCGCTGGATGCCGAACAGGCCCTAAAAGCCGGCGATTTCCGGCTGGTGTTCCAGCCACGCATCAACCTTGAAGACTTAT
CGGTGACCGGCTTCGAGGCGTTGCTGCGCTGGCATCACGCCAGCCTCGGCCCGATCGGTCCCGACGAGTTCATCCCGCTC
TTCGAAAAAACCGCACTGATGTGCACGGTCACCAATTGGGTGATCGAAAGCGCCTTGGTACAGCTGGCGGAATGGCGTAC
CCAGGGCTTGGATTTTTCCATCTCCATCAACCTGTCGTCGCGCGATTTCGGCAACATCAACCTGGCAGCGGATGTGATCA
ACCGCTGCAAGGACCTGGCGATTCCCACCACATGCATCGAACTGGAAATCACCGAAGGCCGCTGGCTGCGCAGCAATGTC
GAAGCGGTGCCGCGGCTGCGCGCGCTGCGCGATGCAGGCGTGAGCGTGGCCATCGACGATTTCGGCACCGGCTATAGCAA
CTTCGGCTATCTCACCGAGTTGCCGGTCAATGTGCTCAAGCTGGACCGGTCGCTGGTGACTGGCATCGCCACCAAAACCG
GCATGCAGATGCGCGCCGAGGCGGTGGTGCGCCTGGCCAACGCGTTGGGTTATCGCACCGTGGCCGAGGGCATCGAGCAC
GCCGATGAGATTGCGTTGCTGCGGAGCTGGGGATGCGATGAGGCGCAGGGGTATCTGCTCGCCAAACCCATGGAGGCGCA
TCTGGTGGCCGACTACGTCAAACAAACCGGGGCGCTGCAGCGTCTGCCGTAG

Upstream 100 bases:

>100_bases
GTTTGCAGAAAAAATCGAAAGTGATTGGCTCGACACGTAGTTCGTGGAGTTTCCGTCACCTATCGATGACCTCGGTTTGT
TTCTAGTAGCGGTGCAGTGT

Downstream 100 bases:

>100_bases
AGCCGCGGCGGTGCGCGGATGCGCCGGACAGGCAACCGCACCACGCCGCGCCGTGCGGATGCATGCGCCATGCCTTGCGA
TGCGATGCACGTCCAACCTG

Product: putative signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 603; Mature: 603

Protein sequence:

>603_residues
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITEGGRLRVLAARGISSSHVRQA
MELCQQVPPAPNGVTELIEHATLAQIQLGDAAFPGLPARFIACVPVGAPQTGIAGTLCVIDTRERRLASQEHQQLLMFAN
VAAAQLELQFGAGRREPHSGLLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVVRFAPQQPDTNDVMRKGLVAL
GDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALKAGDFRLVFQPRINLEDLSVTGFEALLRWHHASLGPIGPDEFIPL
FEKTALMCTVTNWVIESALVQLAEWRTQGLDFSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAEAVVRLANALGYRTVAEGIEH
ADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTGALQRLP

Sequences:

>Translated_603_residues
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITEGGRLRVLAARGISSSHVRQA
MELCQQVPPAPNGVTELIEHATLAQIQLGDAAFPGLPARFIACVPVGAPQTGIAGTLCVIDTRERRLASQEHQQLLMFAN
VAAAQLELQFGAGRREPHSGLLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVVRFAPQQPDTNDVMRKGLVAL
GDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALKAGDFRLVFQPRINLEDLSVTGFEALLRWHHASLGPIGPDEFIPL
FEKTALMCTVTNWVIESALVQLAEWRTQGLDFSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAEAVVRLANALGYRTVAEGIEH
ADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTGALQRLP
>Mature_603_residues
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITEGGRLRVLAARGISSSHVRQA
MELCQQVPPAPNGVTELIEHATLAQIQLGDAAFPGLPARFIACVPVGAPQTGIAGTLCVIDTRERRLASQEHQQLLMFAN
VAAAQLELQFGAGRREPHSGLLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVVRFAPQQPDTNDVMRKGLVAL
GDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALKAGDFRLVFQPRINLEDLSVTGFEALLRWHHASLGPIGPDEFIPL
FEKTALMCTVTNWVIESALVQLAEWRTQGLDFSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAEAVVRLANALGYRTVAEGIEH
ADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTGALQRLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=27.5058275058275, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=35.2226720647773, Blast_Score=156, Evalue=4e-39,
Organism=Escherichia coli, GI1787541, Length=409, Percent_Identity=24.4498777506112, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI226510982, Length=258, Percent_Identity=31.7829457364341, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788502, Length=342, Percent_Identity=29.2397660818713, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=32.6271186440678, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1786507, Length=251, Percent_Identity=29.8804780876494, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=33.1967213114754, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87081845, Length=233, Percent_Identity=29.6137339055794, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1787055, Length=279, Percent_Identity=27.9569892473118, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082096, Length=230, Percent_Identity=32.1739130434783, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788849, Length=238, Percent_Identity=29.8319327731092, Blast_Score=96, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 65882; Mature: 65882

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITE
CCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHEEEEEC
GGRLRVLAARGISSSHVRQAMELCQQVPPAPNGVTELIEHATLAQIQLGDAAFPGLPARF
CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCHH
IACVPVGAPQTGIAGTLCVIDTRERRLASQEHQQLLMFANVAAAQLELQFGAGRREPHSG
EEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
LLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVV
HHHCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEE
RFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALKAGDF
EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHCCCCE
RLVFQPRINLEDLSVTGFEALLRWHHASLGPIGPDEFIPLFEKTALMCTVTNWVIESALV
EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEHHHHHHHHHHHH
QLAEWRTQGLDFSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
HHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAE
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
AVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTGALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCC
RLP
CCC
>Mature Secondary Structure
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITE
CCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHEEEEEC
GGRLRVLAARGISSSHVRQAMELCQQVPPAPNGVTELIEHATLAQIQLGDAAFPGLPARF
CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCHH
IACVPVGAPQTGIAGTLCVIDTRERRLASQEHQQLLMFANVAAAQLELQFGAGRREPHSG
EEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
LLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVV
HHHCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEE
RFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALKAGDF
EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHCCCCE
RLVFQPRINLEDLSVTGFEALLRWHHASLGPIGPDEFIPLFEKTALMCTVTNWVIESALV
EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEHHHHHHHHHHHH
QLAEWRTQGLDFSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
HHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAE
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
AVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTGALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCC
RLP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]