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The map label for this gene is ycgR [H]

Identifier: 78047492

GI number: 78047492

Start: 2191361

End: 2192146

Strand: Reverse

Name: ycgR [H]

Synonym: XCV1936

Alternate gene names: 78047492

Gene position: 2192146-2191361 (Counterclockwise)

Preceding gene: 78047493

Following gene: 78047491

Centisome position: 42.33

GC content: 64.5

Gene sequence:

>786_bases
ATGTCCCAAGGCGATACCTCAGAGCTGGACCACGACGCCGATCACCTCGCCGAAGGTGACGAGCGCTACCTGCTGCGCAA
CAAGCGGCAGATCCGTGGATTGCTGCGCCAGCTGCTCGACCAACGCGCCATCGTGACCATGCATGTGGCTGGCCGCGACA
TGGCCGTGCCCACCGCCGTGCTGGAAGTGGACGAAGACGACGACTGCGTGATCCTGGACGGCAGCCATAACGATGCCTCC
AACCGCGCCATCGAGGGCGCCAAATACCTGCTGTGCTACGCCCAACTGGAACGGGTGAACATCCGCTTCCGCCTGGAAAA
GGCCGAACGGATCGAGCGCGATATCCACGTCGCCTTCCGCGTCGACCTGCCTGCCGCGATGTACCACATGCAGCGGCGCG
AATCGTACCGGCTGGAAACGCCGATCACCGATTCGCCCGTCTGCACCATCCGCCAGGAAGCGGCGCAGGGAAACGAGTTC
AACCTGCAGCTGCGCGTGATCGACATCAGCAGCGGCGGCCTGGCGGTGTCCCTCACCGACGGGATGCCCTTGCTCGAATT
GCAACGCACCTACCGCAACTGCATCCTGCAATTGCCCGACACCGCCCCGATCACGCTGCCGCTGACCGTGTGCAGCCAGC
ACAAGCAGGCCCTGCCCAACGGCAGCGAAGGCTTCCGGATCGGCATGCAGTTCAGCGACCTGCCGCGCGGCGCCGACGAA
ACCATCCAGCGCTACATTTTCCGTGTCGACCGCCAGCGCAATGCGCGCAAGAGCGGCGTGTTCTGA

Upstream 100 bases:

>100_bases
GTTTGGTCGGCCGCCTTAAAGATTTGGCTTTGCCGCCGATATCAAGGCGACGCCGGGACAACCCGCCAGGCGCCTTCCCG
CTTCTACTGTGCTTGTGCCC

Downstream 100 bases:

>100_bases
ACCCTCGCGTACCACGCGGGGCCGGCACCTAAAGTTGCCGCCTACCCCGCCGATGTTGCTAGGGCATCCCGCATCCGTCT
CTGCTGCCGCAGTCCTGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR [H]

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSQGDTSELDHDADHLAEGDERYLLRNKRQIRGLLRQLLDQRAIVTMHVAGRDMAVPTAVLEVDEDDDCVILDGSHNDAS
NRAIEGAKYLLCYAQLERVNIRFRLEKAERIERDIHVAFRVDLPAAMYHMQRRESYRLETPITDSPVCTIRQEAAQGNEF
NLQLRVIDISSGGLAVSLTDGMPLLELQRTYRNCILQLPDTAPITLPLTVCSQHKQALPNGSEGFRIGMQFSDLPRGADE
TIQRYIFRVDRQRNARKSGVF

Sequences:

>Translated_261_residues
MSQGDTSELDHDADHLAEGDERYLLRNKRQIRGLLRQLLDQRAIVTMHVAGRDMAVPTAVLEVDEDDDCVILDGSHNDAS
NRAIEGAKYLLCYAQLERVNIRFRLEKAERIERDIHVAFRVDLPAAMYHMQRRESYRLETPITDSPVCTIRQEAAQGNEF
NLQLRVIDISSGGLAVSLTDGMPLLELQRTYRNCILQLPDTAPITLPLTVCSQHKQALPNGSEGFRIGMQFSDLPRGADE
TIQRYIFRVDRQRNARKSGVF
>Mature_260_residues
SQGDTSELDHDADHLAEGDERYLLRNKRQIRGLLRQLLDQRAIVTMHVAGRDMAVPTAVLEVDEDDDCVILDGSHNDASN
RAIEGAKYLLCYAQLERVNIRFRLEKAERIERDIHVAFRVDLPAAMYHMQRRESYRLETPITDSPVCTIRQEAAQGNEFN
LQLRVIDISSGGLAVSLTDGMPLLELQRTYRNCILQLPDTAPITLPLTVCSQHKQALPNGSEGFRIGMQFSDLPRGADET
IQRYIFRVDRQRNARKSGVF

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 29647; Mature: 29516

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQGDTSELDHDADHLAEGDERYLLRNKRQIRGLLRQLLDQRAIVTMHVAGRDMAVPTAV
CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEE
LEVDEDDDCVILDGSHNDASNRAIEGAKYLLCYAQLERVNIRFRLEKAERIERDIHVAFR
EEECCCCCEEEEECCCCCCCHHHHCCHHHHHEEEEHHEEEEEEEECHHHHHHHHEEEEEE
VDLPAAMYHMQRRESYRLETPITDSPVCTIRQEAAQGNEFNLQLRVIDISSGGLAVSLTD
ECCCHHHHHHHHHHCCEECCCCCCCCCEEEEHHHCCCCEEEEEEEEEEECCCCEEEEECC
GMPLLELQRTYRNCILQLPDTAPITLPLTVCSQHKQALPNGSEGFRIGMQFSDLPRGADE
CCCHHHHHHHHHHHEEECCCCCCEEEEHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH
TIQRYIFRVDRQRNARKSGVF
HHHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure 
SQGDTSELDHDADHLAEGDERYLLRNKRQIRGLLRQLLDQRAIVTMHVAGRDMAVPTAV
CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEE
LEVDEDDDCVILDGSHNDASNRAIEGAKYLLCYAQLERVNIRFRLEKAERIERDIHVAFR
EEECCCCCEEEEECCCCCCCHHHHCCHHHHHEEEEHHEEEEEEEECHHHHHHHHEEEEEE
VDLPAAMYHMQRRESYRLETPITDSPVCTIRQEAAQGNEFNLQLRVIDISSGGLAVSLTD
ECCCHHHHHHHHHHCCEECCCCCCCCCEEEEHHHCCCCEEEEEEEEEEECCCCEEEEECC
GMPLLELQRTYRNCILQLPDTAPITLPLTVCSQHKQALPNGSEGFRIGMQFSDLPRGADE
CCCHHHHHHHHHHHEEECCCCCCEEEEHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH
TIQRYIFRVDRQRNARKSGVF
HHHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA