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The map label for this gene is oma [H]

Identifier: 78047026

GI number: 78047026

Start: 1651117

End: 1653483

Strand: Reverse

Name: oma [H]

Synonym: XCV1470

Alternate gene names: 78047026

Gene position: 1653483-1651117 (Counterclockwise)

Preceding gene: 78047027

Following gene: 78047024

Centisome position: 31.93

GC content: 62.74

Gene sequence:

>2367_bases
ATGACGCGTCTTCCCACTCGCCGCCTGCTTGCCCTCGCTCTTGCCGCCGGCCTCAGCCTGCCGGCCGTTGCTCTGGCCGT
CGAGCCGTTCGTTGCCAGCGACATCCGCGTCGACGGCCTGCAGCGCATCGCCTCCGGCACCGTATTCACCTATCTGCCGG
TGAACCGCGGCGACACCGTGGACGATGCCAAGGTGGCCGACGCGATCCGTGCGCTCTACCGCACCGGCTTCTTCGAGGAC
GTGCAGCTGGACCGCCAGGGCAACATCCTGGTGATCACGGTCAAGGAGCGCCCGGCGATCAACAAGCTCACCGTGACCGG
CAATAAGGACATCAAGTCCGAGGAACTGCTCAAGGGCCTGGGTGACATCGGCCTGTCCGAGGGCGGCACCTTCGATCGCC
TGAGCCTGGACCGCGTGACCCAGGAACTGACCCGCCAGTACAACAACCGCGGCAAGTACAACGTGGAAATCACCCCGACG
GTGAGTCCGCTGGACCGTAACCGCGTCGACGTGGCCATCGCGATCAAGGAAGGCAAGGCGGCCAAGATCCGCCACGTCAA
CCTGATCGGTACGGAAAAGTTCGCCAACGAGGACATCCTGGACAACTGGGAATCCAAGGAGCACAACTGGGCCTCGTGGT
ACCGCCGCGACGACCAGTACTCCAAGGAAAAGATGTCCGGCGACCTGGAAAAGCTCAACTCCTGGTACCTGGACCGCGGC
TATGTCGACTTCAGCATCGACTCCACCCAGGTCTCGATCAGCCCCGACAAGCGCGATATGTTCATCAGCGCCGGCGTCAC
CGAGGGCGAGCAGTACAAGATTTCCGAAATCAAGGTGACCGGCGACACCGTGCTGCCGCAGGCCGACATCGAGCGCCTGG
TGATCCCCAAGGCCGGCGACATCTTCTCGCGTGCATTGCTGGAGTACACCTCCGATGCGATCACCAACACGCTGAGCAAC
GTCGGCTACGCGTTCGCCAAGGTCAACCCGATCCCGACGCCGAACCGCGAAGACCGCACCGTGGCAGTGAACCTGCAGGT
GGTGCCCGGCCCGCGCGTGACCGTGCGCCGCATCCTCTACAAGGGCAACAGCCGCACCTCCGACGAGGTCTTGCGCCGCG
AAATGCGCCAGTTCGAGAACACTTGGTACTCGCAGGCGGCGATCGACCGTTCCAAGATCCGCCTGCAGCGGTTGGGCTAC
TTCGAAAGCGTGGACGTGGAAACGCCCGCGGTGCCCGGCAGCAACGACCAGGTCGACGTGGTCTACAACGTCAAGGAGAC
CACCTCCGGCAGCTTCGTGTTCGGCCTGGGCTACTCGCAGAGCTTCGGTGTGACCACCTCGGTGCAGTTGTCGCAGAACA
ACTTCCTGGGTGGCGGTAACCGCGTGGCAGTGGAGGCTTCGCGCAGCAGCTACCAGCAACGCTACGCGTTCTCCTACACC
AATCCGTTCTTTACCGACGACGGCGTATCGCTGGGCTACAACCTGTCCTGGCGCGCGCTGGATTACTCGGACTTCAATAC
CGCACAGTTCAACAGCAAGAATGGTTCGGCGCAGGTGGTGTTCGGCGTGCCGATCACCGAAAACGACACCGTCTCGGCGA
TGGTGGGTATCGACAGCAACCAGATCACGACCTTCGCGGGCACCACACCGCAGGCGATCATCGACTACATCAATGCGATC
GGCACGCGCACCTTCCATGCCTGGCGCACGGAGCTGGGCTGGGCACGCGACACCCGCAACGACTTCTTCATGCCGACCCG
CGGCATGTACCAACGCGTGGGCCTGGAGACCACCCTGCCCGGCTCCACGGTCGAGTACTACAAGCTCAACTACCAGATCT
CCAACTACTGGCCGATCATTCCGGCGCTGGTGTTGAACACGCGCTTCGAACTGGGCTACGGCGACAGTTACGGGAAGGAC
AGCACCCGCGTGCTGACCAACCCGGATGGCAGCACCCGCACGGTCACCGCCACCGGCCTGCCGTTCTACGAGAACTTCTA
CGCCGGCGGCACCAATTCGGTTCGTGGCTTCGAAGACAACACCCTGGGCCCGCGTTCGGAAGCGATCAATGGCTTTACCC
GCGGCCAGCCGTTGGGTGGCTCGTTCAAGACGGTGGGCTCGGTGGAAATGTATTTCCCCAAGCTGTTCGACAGCCCGTCG
GCGCGCGTTTCGGCATTCGTCGACTTCGGTAACGTGTACAACGGGGTGGACAACTTCAAGGCCAACGAGTTGCGCGCCTC
TACCGGTGTGGCGCTGTTGTGGCGCGCGCCTGTCGGCCCCATTTCGATCAGCTACGCATTCCCGCTGAAGAAGGAAGACA
ACGACGAGATCGAGCGTCTGCAGTTCACCTTCGGCGGCCAGTTCTAA

Upstream 100 bases:

>100_bases
GCCTGGTTCCACGATGAAGCTGCTCCACTCTTTCCGCCTGTTGTCGTCGTCATACGCCGGCATCCAGCAACACCCGAATA
CGACTCCAACCGGATGTGAC

Downstream 100 bases:

>100_bases
GATTGGCACGCGAAACAATGGCGGCCCGGACGCCCGGGCCGCCATTGTTGTTTGAACACCCTGGTATGAAACAGCTTCAG
AAGTAGTTGTTCCAGACATT

Product: outer membrane antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 787

Protein sequence:

>788_residues
MTRLPTRRLLALALAAGLSLPAVALAVEPFVASDIRVDGLQRIASGTVFTYLPVNRGDTVDDAKVADAIRALYRTGFFED
VQLDRQGNILVITVKERPAINKLTVTGNKDIKSEELLKGLGDIGLSEGGTFDRLSLDRVTQELTRQYNNRGKYNVEITPT
VSPLDRNRVDVAIAIKEGKAAKIRHVNLIGTEKFANEDILDNWESKEHNWASWYRRDDQYSKEKMSGDLEKLNSWYLDRG
YVDFSIDSTQVSISPDKRDMFISAGVTEGEQYKISEIKVTGDTVLPQADIERLVIPKAGDIFSRALLEYTSDAITNTLSN
VGYAFAKVNPIPTPNREDRTVAVNLQVVPGPRVTVRRILYKGNSRTSDEVLRREMRQFENTWYSQAAIDRSKIRLQRLGY
FESVDVETPAVPGSNDQVDVVYNVKETTSGSFVFGLGYSQSFGVTTSVQLSQNNFLGGGNRVAVEASRSSYQQRYAFSYT
NPFFTDDGVSLGYNLSWRALDYSDFNTAQFNSKNGSAQVVFGVPITENDTVSAMVGIDSNQITTFAGTTPQAIIDYINAI
GTRTFHAWRTELGWARDTRNDFFMPTRGMYQRVGLETTLPGSTVEYYKLNYQISNYWPIIPALVLNTRFELGYGDSYGKD
STRVLTNPDGSTRTVTATGLPFYENFYAGGTNSVRGFEDNTLGPRSEAINGFTRGQPLGGSFKTVGSVEMYFPKLFDSPS
ARVSAFVDFGNVYNGVDNFKANELRASTGVALLWRAPVGPISISYAFPLKKEDNDEIERLQFTFGGQF

Sequences:

>Translated_788_residues
MTRLPTRRLLALALAAGLSLPAVALAVEPFVASDIRVDGLQRIASGTVFTYLPVNRGDTVDDAKVADAIRALYRTGFFED
VQLDRQGNILVITVKERPAINKLTVTGNKDIKSEELLKGLGDIGLSEGGTFDRLSLDRVTQELTRQYNNRGKYNVEITPT
VSPLDRNRVDVAIAIKEGKAAKIRHVNLIGTEKFANEDILDNWESKEHNWASWYRRDDQYSKEKMSGDLEKLNSWYLDRG
YVDFSIDSTQVSISPDKRDMFISAGVTEGEQYKISEIKVTGDTVLPQADIERLVIPKAGDIFSRALLEYTSDAITNTLSN
VGYAFAKVNPIPTPNREDRTVAVNLQVVPGPRVTVRRILYKGNSRTSDEVLRREMRQFENTWYSQAAIDRSKIRLQRLGY
FESVDVETPAVPGSNDQVDVVYNVKETTSGSFVFGLGYSQSFGVTTSVQLSQNNFLGGGNRVAVEASRSSYQQRYAFSYT
NPFFTDDGVSLGYNLSWRALDYSDFNTAQFNSKNGSAQVVFGVPITENDTVSAMVGIDSNQITTFAGTTPQAIIDYINAI
GTRTFHAWRTELGWARDTRNDFFMPTRGMYQRVGLETTLPGSTVEYYKLNYQISNYWPIIPALVLNTRFELGYGDSYGKD
STRVLTNPDGSTRTVTATGLPFYENFYAGGTNSVRGFEDNTLGPRSEAINGFTRGQPLGGSFKTVGSVEMYFPKLFDSPS
ARVSAFVDFGNVYNGVDNFKANELRASTGVALLWRAPVGPISISYAFPLKKEDNDEIERLQFTFGGQF
>Mature_787_residues
TRLPTRRLLALALAAGLSLPAVALAVEPFVASDIRVDGLQRIASGTVFTYLPVNRGDTVDDAKVADAIRALYRTGFFEDV
QLDRQGNILVITVKERPAINKLTVTGNKDIKSEELLKGLGDIGLSEGGTFDRLSLDRVTQELTRQYNNRGKYNVEITPTV
SPLDRNRVDVAIAIKEGKAAKIRHVNLIGTEKFANEDILDNWESKEHNWASWYRRDDQYSKEKMSGDLEKLNSWYLDRGY
VDFSIDSTQVSISPDKRDMFISAGVTEGEQYKISEIKVTGDTVLPQADIERLVIPKAGDIFSRALLEYTSDAITNTLSNV
GYAFAKVNPIPTPNREDRTVAVNLQVVPGPRVTVRRILYKGNSRTSDEVLRREMRQFENTWYSQAAIDRSKIRLQRLGYF
ESVDVETPAVPGSNDQVDVVYNVKETTSGSFVFGLGYSQSFGVTTSVQLSQNNFLGGGNRVAVEASRSSYQQRYAFSYTN
PFFTDDGVSLGYNLSWRALDYSDFNTAQFNSKNGSAQVVFGVPITENDTVSAMVGIDSNQITTFAGTTPQAIIDYINAIG
TRTFHAWRTELGWARDTRNDFFMPTRGMYQRVGLETTLPGSTVEYYKLNYQISNYWPIIPALVLNTRFELGYGDSYGKDS
TRVLTNPDGSTRTVTATGLPFYENFYAGGTNSVRGFEDNTLGPRSEAINGFTRGQPLGGSFKTVGSVEMYFPKLFDSPSA
RVSAFVDFGNVYNGVDNFKANELRASTGVALLWRAPVGPISISYAFPLKKEDNDEIERLQFTFGGQF

Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=828, Percent_Identity=35.8695652173913, Blast_Score=507, Evalue=1e-144,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 87690; Mature: 87559

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLPTRRLLALALAAGLSLPAVALAVEPFVASDIRVDGLQRIASGTVFTYLPVNRGDTV
CCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCHHHHHHHHCCCEEEEEECCCCCCC
DDAKVADAIRALYRTGFFEDVQLDRQGNILVITVKERPAINKLTVTGNKDIKSEELLKGL
CHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHH
GDIGLSEGGTFDRLSLDRVTQELTRQYNNRGKYNVEITPTVSPLDRNRVDVAIAIKEGKA
HCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC
AKIRHVNLIGTEKFANEDILDNWESKEHNWASWYRRDDQYSKEKMSGDLEKLNSWYLDRG
EEEEEEEEEECHHHCCCHHHCCCCCCCCCHHHHHHCCCHHHHHHHCCCHHHHHHHEEECC
YVDFSIDSTQVSISPDKRDMFISAGVTEGEQYKISEIKVTGDTVLPQADIERLVIPKAGD
EEEEEECCEEEEECCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCEEECCCCCH
IFSRALLEYTSDAITNTLSNVGYAFAKVNPIPTPNREDRTVAVNLQVVPGPRVTVRRILY
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHEE
KGNSRTSDEVLRREMRQFENTWYSQAAIDRSKIRLQRLGYFESVDVETPAVPGSNDQVDV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEE
VYNVKETTSGSFVFGLGYSQSFGVTTSVQLSQNNFLGGGNRVAVEASRSSYQQRYAFSYT
EEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECHHHHHHHEEEEEC
NPFFTDDGVSLGYNLSWRALDYSDFNTAQFNSKNGSAQVVFGVPITENDTVSAMVGIDSN
CCEECCCCCEECCCEEEEEECCCCCCCEEECCCCCCEEEEEEECCCCCCCEEEEEECCCC
QITTFAGTTPQAIIDYINAIGTRTFHAWRTELGWARDTRNDFFMPTRGMYQRVGLETTLP
CEEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
GSTVEYYKLNYQISNYWPIIPALVLNTRFELGYGDSYGKDSTRVLTNPDGSTRTVTATGL
CCEEEEEEEEEEECCCCCHHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCEEEEEEECC
PFYENFYAGGTNSVRGFEDNTLGPRSEAINGFTRGQPLGGSFKTVGSVEMYFPKLFDSPS
CHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCC
ARVSAFVDFGNVYNGVDNFKANELRASTGVALLWRAPVGPISISYAFPLKKEDNDEIERL
CEEEEEEEHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEE
QFTFGGQF
EEEECCCC
>Mature Secondary Structure 
TRLPTRRLLALALAAGLSLPAVALAVEPFVASDIRVDGLQRIASGTVFTYLPVNRGDTV
CCCCHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCHHHHHHHHCCCEEEEEECCCCCCC
DDAKVADAIRALYRTGFFEDVQLDRQGNILVITVKERPAINKLTVTGNKDIKSEELLKGL
CHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHH
GDIGLSEGGTFDRLSLDRVTQELTRQYNNRGKYNVEITPTVSPLDRNRVDVAIAIKEGKA
HCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC
AKIRHVNLIGTEKFANEDILDNWESKEHNWASWYRRDDQYSKEKMSGDLEKLNSWYLDRG
EEEEEEEEEECHHHCCCHHHCCCCCCCCCHHHHHHCCCHHHHHHHCCCHHHHHHHEEECC
YVDFSIDSTQVSISPDKRDMFISAGVTEGEQYKISEIKVTGDTVLPQADIERLVIPKAGD
EEEEEECCEEEEECCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCEEECCCCCH
IFSRALLEYTSDAITNTLSNVGYAFAKVNPIPTPNREDRTVAVNLQVVPGPRVTVRRILY
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHEE
KGNSRTSDEVLRREMRQFENTWYSQAAIDRSKIRLQRLGYFESVDVETPAVPGSNDQVDV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEE
VYNVKETTSGSFVFGLGYSQSFGVTTSVQLSQNNFLGGGNRVAVEASRSSYQQRYAFSYT
EEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECHHHHHHHEEEEEC
NPFFTDDGVSLGYNLSWRALDYSDFNTAQFNSKNGSAQVVFGVPITENDTVSAMVGIDSN
CCEECCCCCEECCCEEEEEECCCCCCCEEECCCCCCEEEEEEECCCCCCCEEEEEECCCC
QITTFAGTTPQAIIDYINAIGTRTFHAWRTELGWARDTRNDFFMPTRGMYQRVGLETTLP
CEEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
GSTVEYYKLNYQISNYWPIIPALVLNTRFELGYGDSYGKDSTRVLTNPDGSTRTVTATGL
CCEEEEEEEEEEECCCCCHHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCEEEEEEECC
PFYENFYAGGTNSVRGFEDNTLGPRSEAINGFTRGQPLGGSFKTVGSVEMYFPKLFDSPS
CHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCC
ARVSAFVDFGNVYNGVDNFKANELRASTGVALLWRAPVGPISISYAFPLKKEDNDEIERL
CEEEEEEEHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEE
QFTFGGQF
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA