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The map label for this gene is ganB [H]

Identifier: 78046916

GI number: 78046916

Start: 1534486

End: 1535697

Strand: Reverse

Name: ganB [H]

Synonym: XCV1360

Alternate gene names: 78046916

Gene position: 1535697-1534486 (Counterclockwise)

Preceding gene: 78046917

Following gene: 78046915

Centisome position: 29.66

GC content: 62.71

Gene sequence:

>1212_bases
ATGCGCTCACCACGCCGTCTCTGGACACCCGCGCTCCTGGCGCTGGCCATTTCCACCTTCGCACACGCCGCCCCGGCTCC
GGCCACGTTGTATCTCGGCGCGGACCTGTCCTACGTCAACGAGATGGAAGAATGCGGTGTGCAATACCGCGAGAACGGCG
TGGTCAAAGATCCGTTCGAACTGTTCCATGCGCACGGGGCCAATCTGGTGCGCGTACGCTTGTGGAACGATGCGCGCTGG
ACCCGCTACAGCGACCTGGCGGACGTCAAGAAGACCATTGCACGTGCACGCGCGCAAGGCATGCAGGTGCTGCTGGATCT
GCACTACTCCGACGATTGGGCCGACGGCGAAAAGCAATTGATCCCCAAGGCCTGGGCCAGCATCGCCGACACCGATGAAC
TGGCACGCACGCTGTACGGCTTCACCTATGACACGCTCAGCGCGCTCGACCGTGCCGGTCTGATGCCCGAGCTCGTGCAA
GTGGGCAACGAAAGCAATTCCGACCTGATGGACAGCACGCCCTGGGACAAAAAACGCCCCATCAACTGGCAGCGCAATGC
CAAGCTGTTCAACGCCGGCATCAAGGCGGTGCGCGACATGAGCGTACGCTCGGCGATCAAACCGCGGGTGATGCTGCATA
TCGCCCAGCCGGAAAATGTGGAGCCGTGGTTCGCCGACGCCACCAAGGCCGGCGTCACCGATTTCGATCTGATCGGCATC
AGCTACTACCGTAAATGGTCCACGCAATCGATGGCCGAGCTGGGCAAGACCATCAGGCGTTTGCGCGGCCGCTACGATGC
CGATGTGGTGGTAGTGGAAACCGCGTACCCGTGGACGCTGGACTCCGGCGACACCTCGCACAATCTGCTCGGCGAGGATT
CGCTGATTGCCGGCTACCCGGCCACGCCGCAAGGCCAGGCGCGCTACATGGTGGACCTCACCCAACTGGTCATCGATACC
GGCGGCGCCGGCGTGGTGTATTGGGAGCCGGCATGGACCAGCAGCCATTGCAAAACGCGTTGGGGCACCGGCTCGTCGTG
GGAAAACGCCAGCTTCTTCGACTTCAAGCACGGCAACGAGGTGTTGCCGGCGATCGACTTCATGCGCCACCCGTATACCG
GTGTGCCTGCATCGCGTGCATCCGACGCGGGCAAGCATGATGCGAGCGCGCCAGAGAGTTCTGTAGATGCCGGCAAAAGG
ACGCAGCCATGA

Upstream 100 bases:

>100_bases
TCTGCAAGCCACGTTTGGACTCTGCACAGCGGCCGTGCAGCAGCACGGCCGCCTGCGGCATGCTGTCACCCGCTCCACGT
TGTCTCTGTCGAGGAATTGC

Downstream 100 bases:

>100_bases
GTGGTATCAATCGACGCGAGTTGCTGCGCGGCATGCTGGCCAGTGGGGTAAGCGCCGCACTGCCGATGGGCGCAGCCGGC
ACTTTGGCATCGCCTGGCGC

Product: putative galactosidase precursor

Products: NA

Alternate protein names: Endo-1,4-beta-galactanase; Galactanase [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MRSPRRLWTPALLALAISTFAHAAPAPATLYLGADLSYVNEMEECGVQYRENGVVKDPFELFHAHGANLVRVRLWNDARW
TRYSDLADVKKTIARARAQGMQVLLDLHYSDDWADGEKQLIPKAWASIADTDELARTLYGFTYDTLSALDRAGLMPELVQ
VGNESNSDLMDSTPWDKKRPINWQRNAKLFNAGIKAVRDMSVRSAIKPRVMLHIAQPENVEPWFADATKAGVTDFDLIGI
SYYRKWSTQSMAELGKTIRRLRGRYDADVVVVETAYPWTLDSGDTSHNLLGEDSLIAGYPATPQGQARYMVDLTQLVIDT
GGAGVVYWEPAWTSSHCKTRWGTGSSWENASFFDFKHGNEVLPAIDFMRHPYTGVPASRASDAGKHDASAPESSVDAGKR
TQP

Sequences:

>Translated_403_residues
MRSPRRLWTPALLALAISTFAHAAPAPATLYLGADLSYVNEMEECGVQYRENGVVKDPFELFHAHGANLVRVRLWNDARW
TRYSDLADVKKTIARARAQGMQVLLDLHYSDDWADGEKQLIPKAWASIADTDELARTLYGFTYDTLSALDRAGLMPELVQ
VGNESNSDLMDSTPWDKKRPINWQRNAKLFNAGIKAVRDMSVRSAIKPRVMLHIAQPENVEPWFADATKAGVTDFDLIGI
SYYRKWSTQSMAELGKTIRRLRGRYDADVVVVETAYPWTLDSGDTSHNLLGEDSLIAGYPATPQGQARYMVDLTQLVIDT
GGAGVVYWEPAWTSSHCKTRWGTGSSWENASFFDFKHGNEVLPAIDFMRHPYTGVPASRASDAGKHDASAPESSVDAGKR
TQP
>Mature_403_residues
MRSPRRLWTPALLALAISTFAHAAPAPATLYLGADLSYVNEMEECGVQYRENGVVKDPFELFHAHGANLVRVRLWNDARW
TRYSDLADVKKTIARARAQGMQVLLDLHYSDDWADGEKQLIPKAWASIADTDELARTLYGFTYDTLSALDRAGLMPELVQ
VGNESNSDLMDSTPWDKKRPINWQRNAKLFNAGIKAVRDMSVRSAIKPRVMLHIAQPENVEPWFADATKAGVTDFDLIGI
SYYRKWSTQSMAELGKTIRRLRGRYDADVVVVETAYPWTLDSGDTSHNLLGEDSLIAGYPATPQGQARYMVDLTQLVIDT
GGAGVVYWEPAWTSSHCKTRWGTGSSWENASFFDFKHGNEVLPAIDFMRHPYTGVPASRASDAGKHDASAPESSVDAGKR
TQP

Specific function: Unknown

COG id: COG3867

COG function: function code G; Arabinogalactan endo-1,4-beta-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 53 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011683
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07745 Glyco_hydro_53 [H]

EC number: =3.2.1.89 [H]

Molecular weight: Translated: 44901; Mature: 44901

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSPRRLWTPALLALAISTFAHAAPAPATLYLGADLSYVNEMEECGVQYRENGVVKDPFE
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCHHHCCCCCCCHHH
LFHAHGANLVRVRLWNDARWTRYSDLADVKKTIARARAQGMQVLLDLHYSDDWADGEKQL
HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHH
IPKAWASIADTDELARTLYGFTYDTLSALDRAGLMPELVQVGNESNSDLMDSTPWDKKRP
HHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
INWQRNAKLFNAGIKAVRDMSVRSAIKPRVMLHIAQPENVEPWFADATKAGVTDFDLIGI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHCCCCCCEEHHH
SYYRKWSTQSMAELGKTIRRLRGRYDADVVVVETAYPWTLDSGDTSHNLLGEDSLIAGYP
HHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCEEECCC
ATPQGQARYMVDLTQLVIDTGGAGVVYWEPAWTSSHCKTRWGTGSSWENASFFDFKHGNE
CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
VLPAIDFMRHPYTGVPASRASDAGKHDASAPESSVDAGKRTQP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
>Mature Secondary Structure
MRSPRRLWTPALLALAISTFAHAAPAPATLYLGADLSYVNEMEECGVQYRENGVVKDPFE
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCHHHCCCCCCCHHH
LFHAHGANLVRVRLWNDARWTRYSDLADVKKTIARARAQGMQVLLDLHYSDDWADGEKQL
HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHH
IPKAWASIADTDELARTLYGFTYDTLSALDRAGLMPELVQVGNESNSDLMDSTPWDKKRP
HHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
INWQRNAKLFNAGIKAVRDMSVRSAIKPRVMLHIAQPENVEPWFADATKAGVTDFDLIGI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHCCCCCCEEHHH
SYYRKWSTQSMAELGKTIRRLRGRYDADVVVVETAYPWTLDSGDTSHNLLGEDSLIAGYP
HHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCEEECCC
ATPQGQARYMVDLTQLVIDTGGAGVVYWEPAWTSSHCKTRWGTGSSWENASFFDFKHGNE
CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
VLPAIDFMRHPYTGVPASRASDAGKHDASAPESSVDAGKRTQP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9398278 [H]