| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is 78046917
Identifier: 78046917
GI number: 78046917
Start: 1535882
End: 1538575
Strand: Reverse
Name: 78046917
Synonym: XCV1361
Alternate gene names: NA
Gene position: 1538575-1535882 (Counterclockwise)
Preceding gene: 78046918
Following gene: 78046916
Centisome position: 29.71
GC content: 64.18
Gene sequence:
>2694_bases ATGCCTGTTCACCATACCGGCCACCCGGCCAGTCGGCGCCTGCGCCGCACGCCCGTTCGCGCCATCCTGTGCACCACCAT CGCTTGTGTGCTGGCCACCGCGTTCGGCGCGCATGCACAGGACACTGCACCCGCCGCGCCGCCGGCCAACGACACCAGCA GCGCCGCCAGCAATGGCCAGGCGCCGGTCACGTTGGACAACATCACCGTGATCGGCCAGCGCGCCAGCCTGAATCAGGCG GTGCAAGCCAAGCAGATGTCCGATCATGTCGTGGAAGTGATTTCCGCAGACAACATGGGCCAGATGCCCAACGTCACCGT GGCCGAGGCGCTGGTGCGGCTGCCCGGCGTCAATGGCACCCGCGACCGCGGCAACGAGAGCCTGGCCACCGTGCGCGGGC TGGGCCCGCGCATGACCATGGGCACCGTCAACGGGCGCGAAATCGCCTCGTCCGAGCCCAACCGCGCAGTGCGTTGGGAG GTGTTCCCCACCGAGATCGTCTCCACCGTCAAGGTCTACAAGACCCAGTCGGCGGATCTGGTCGCCGGCGGTCTTGCCGC CACCGTGGACATCTCCACCATCAGCCCGCTCGACTACACCGGCCCGGGATTCGTCGGCACCGCTGGCCCGGTGTTCTACG ACCACACCAAGGATGTGCACGGCTACAGCCCGTGGGGCAGCCGCTTCGGCGCCAGCTGGGTGCACAAGCTCAACGACAAC CTGGCGGTCGCCTTCGGCGCCACCTACCAGAAGCAGAAGAACGCCAGCTCGTCGATCGGCAGCTGGGGCTATACCGATGC CACCACCTCGCGCGATGTGGATGGCGACGGCACCGTGGACCCGACCCCGTGGGGCGCGGCCGACCAGCTCAAGCTGATCG ACCAAACCCGCACCGGCGCGATGGGCACCGTGCAGTGGCGCTCGGGCAATTTCGAGTTGAAGTTCGACGGCCTGTATTCG CGCATCGAAATCGACGAAGACCAGTTGCAGAACTGGTTCAACGGGCTGGCCTTCAGCACCTTCTCCGGCAGCACCAATCC ATACACCACGCCGGGCTCGTCCTACACCATCGTCGATGGCGATGTGGTGGCCGGCACGCTGGCCAATTCGAACCTGCAGG TCGACCATGTGGTCAGCCACTACAACGAGGTCAAGACACTCACCGCCGGCGGTTTGAACGCCAAGTGGAGCGGCGATGTA TGGACCTTGGGCAGCGACCTGTCGTTTTCGCAGGCCAAGCGCGACAACACCTGGCAGGCGGTGCGTTTCGGCAGCAACCC GGACACCATCTCGTTCGATTTCCGTCGCAGCGTCACCCCCACCATCAGCACCAGCTCGGACACTCCCGAATACGGCATTG CCGGGCAGACCGAGCCGCAGGCGCTGCGCGACAAGATTGCTGCGCTGGCACTCAACGCCAGCCGCGCCGTGGATGCCGGC CCGTTCACGTCGCTGGAACTGGGCGCACGCGCCGCGCGTCGCGAAAAACAGAACCGTCGCTTTCTCAGCAACCAGTCCGG CTACGATCAGCCGATCTCGGCGTATCAGGACCTGATCTACCCGGTCACCATGCCCGACTTGAACGTGCCCACGCTGACCG GCGGCAACATGGCCGAGATCGCACGCATCGGCTTTGGCGGGTTCGATCCGAACACGCTCGACGAACAACTGCTCGACCAT TGGAACGTCAAGGAAGACGTGCGCGAAGCCTTCGCCAAAGCTGTCTTCAGCTCGCAACTGTTCGGCACCGATGTCACCGG CAATGTCGGCGTGCGCCTGGTCAACACCAGGACCACCAGCGAGGGTTTCGATTCGGTCGGCAGCACCATCCAGCCCAGCA CCGGCAGCAAGGAATACACCGACGTGCTGCCCAGTGCCACGCTCAATTTCCTGATCGACGACCAGCGCATCCTGCGCTTT GCAGTGGCCAAGGTCATCGCACGTCCGCCGCTGGACGAACTGCGCACCGGCCGCCGTCTGGACGACCCCAGCGTGACCGT TGGCCAGCTCACCGGCAGCGGCGGCAACCCGCAGCTGGACCCGTTCAAGGCCACCCAGGTCGATGTCTCTTACGAGTGGT ACTTCCACACCGAAGCGCTCGCCGCCCTGGCGGTGTATCGCAAGGAAGTGGATTCGAGCATCGGCTACCGCACCGACCGC GAAACGATCAACGGCCTGGATTACCTGGTCAGCGCGCCGTTCAATGGCGGTGGCGGCTACATCAATGGCGTGGAGCTCAC CTTCCAGACGCCGTTCTACTTCATCCCGCACATGGAAAACTTCGGCGTCTACTCGAACTATTCGCTGGTCGATTCCAACC TCAAGGAATTCTCGCCGGAAGACAACCCGCTGCCGTTGAGCGGGCTGGCACGCAAGACCGGCACCTTCGACCTGTGGTAC AGCAACGGCACCTTCGAAGCGCGCGTGGGCTACAAGTACCACAGCCCCTACACGGTGGTGTACGGCTGGAATGCCGCACG GCTGGCGCGCCTGCAAAGCGAAGGCACGGTGGATCTGAGCTTGAACTGGCAGTACAGCAAGCAGCTCGGCTTCCGTTTCC AGGCCAGCAATCTCACCCACGAGCCGTTGCGCGCCTATACCGACAACAAGCCCAACCGGCTGGCCAATCAGGACGATGGC GGCTACCAGGTATTCGGTCGCCGTTACCAGTTGGAAGCAACCTACAAGTTCTAG
Upstream 100 bases:
>100_bases TGGCCACACCCGCGCAGATGCGCCCGCCCCGCTCCATGCGGCTGGCCGCACCCGCAGCTACCACCGTATTCGGTCACTTT GTCCTGGGAGGGATCAACCG
Downstream 100 bases:
>100_bases GCGTCGCTTGATCGGCTGCACATGCTGCTGCGCAGCCGATCTGATTGCACCTGCATAACACCGCAGCTACTAGGTGGAAT CCAATCTGCAAGCCACGTTT
Product: TonB-dependent outer membrane receptor
Products: NA
Alternate protein names: Nb-Dependent Receptor; NB-Dependent Receptor Subfamily; NB-Dependent Outer Membrane Receptor; NB-Dependent Receptor Plug; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Outer Membrane Receptor Protein; Outer Membrane Protein; Outer Membrane Insertion C-Terminal Signal; NB-Dependent Receptor Subfamily Protein; NB Dependent Receptor-Related Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Protein; Crossover Junction Endodeoxyribonuclease RuvC; NB-Dependent Maltose Outer Membrane Transporter MalA; NB Dependent Receptor For Iron Chelates; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; DEAD/DEAH Box Helicase-Like; Exported nB-Dependent Receptor; Nucleoside Diphosphate Kinase; NB Dependent Receptor Protein; 1-(5-Phosphoribosyl)-5-; Rhodanese-Like Protein; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 897; Mature: 896
Protein sequence:
>897_residues MPVHHTGHPASRRLRRTPVRAILCTTIACVLATAFGAHAQDTAPAAPPANDTSSAASNGQAPVTLDNITVIGQRASLNQA VQAKQMSDHVVEVISADNMGQMPNVTVAEALVRLPGVNGTRDRGNESLATVRGLGPRMTMGTVNGREIASSEPNRAVRWE VFPTEIVSTVKVYKTQSADLVAGGLAATVDISTISPLDYTGPGFVGTAGPVFYDHTKDVHGYSPWGSRFGASWVHKLNDN LAVAFGATYQKQKNASSSIGSWGYTDATTSRDVDGDGTVDPTPWGAADQLKLIDQTRTGAMGTVQWRSGNFELKFDGLYS RIEIDEDQLQNWFNGLAFSTFSGSTNPYTTPGSSYTIVDGDVVAGTLANSNLQVDHVVSHYNEVKTLTAGGLNAKWSGDV WTLGSDLSFSQAKRDNTWQAVRFGSNPDTISFDFRRSVTPTISTSSDTPEYGIAGQTEPQALRDKIAALALNASRAVDAG PFTSLELGARAARREKQNRRFLSNQSGYDQPISAYQDLIYPVTMPDLNVPTLTGGNMAEIARIGFGGFDPNTLDEQLLDH WNVKEDVREAFAKAVFSSQLFGTDVTGNVGVRLVNTRTTSEGFDSVGSTIQPSTGSKEYTDVLPSATLNFLIDDQRILRF AVAKVIARPPLDELRTGRRLDDPSVTVGQLTGSGGNPQLDPFKATQVDVSYEWYFHTEALAALAVYRKEVDSSIGYRTDR ETINGLDYLVSAPFNGGGGYINGVELTFQTPFYFIPHMENFGVYSNYSLVDSNLKEFSPEDNPLPLSGLARKTGTFDLWY SNGTFEARVGYKYHSPYTVVYGWNAARLARLQSEGTVDLSLNWQYSKQLGFRFQASNLTHEPLRAYTDNKPNRLANQDDG GYQVFGRRYQLEATYKF
Sequences:
>Translated_897_residues MPVHHTGHPASRRLRRTPVRAILCTTIACVLATAFGAHAQDTAPAAPPANDTSSAASNGQAPVTLDNITVIGQRASLNQA VQAKQMSDHVVEVISADNMGQMPNVTVAEALVRLPGVNGTRDRGNESLATVRGLGPRMTMGTVNGREIASSEPNRAVRWE VFPTEIVSTVKVYKTQSADLVAGGLAATVDISTISPLDYTGPGFVGTAGPVFYDHTKDVHGYSPWGSRFGASWVHKLNDN LAVAFGATYQKQKNASSSIGSWGYTDATTSRDVDGDGTVDPTPWGAADQLKLIDQTRTGAMGTVQWRSGNFELKFDGLYS RIEIDEDQLQNWFNGLAFSTFSGSTNPYTTPGSSYTIVDGDVVAGTLANSNLQVDHVVSHYNEVKTLTAGGLNAKWSGDV WTLGSDLSFSQAKRDNTWQAVRFGSNPDTISFDFRRSVTPTISTSSDTPEYGIAGQTEPQALRDKIAALALNASRAVDAG PFTSLELGARAARREKQNRRFLSNQSGYDQPISAYQDLIYPVTMPDLNVPTLTGGNMAEIARIGFGGFDPNTLDEQLLDH WNVKEDVREAFAKAVFSSQLFGTDVTGNVGVRLVNTRTTSEGFDSVGSTIQPSTGSKEYTDVLPSATLNFLIDDQRILRF AVAKVIARPPLDELRTGRRLDDPSVTVGQLTGSGGNPQLDPFKATQVDVSYEWYFHTEALAALAVYRKEVDSSIGYRTDR ETINGLDYLVSAPFNGGGGYINGVELTFQTPFYFIPHMENFGVYSNYSLVDSNLKEFSPEDNPLPLSGLARKTGTFDLWY SNGTFEARVGYKYHSPYTVVYGWNAARLARLQSEGTVDLSLNWQYSKQLGFRFQASNLTHEPLRAYTDNKPNRLANQDDG GYQVFGRRYQLEATYKF >Mature_896_residues PVHHTGHPASRRLRRTPVRAILCTTIACVLATAFGAHAQDTAPAAPPANDTSSAASNGQAPVTLDNITVIGQRASLNQAV QAKQMSDHVVEVISADNMGQMPNVTVAEALVRLPGVNGTRDRGNESLATVRGLGPRMTMGTVNGREIASSEPNRAVRWEV FPTEIVSTVKVYKTQSADLVAGGLAATVDISTISPLDYTGPGFVGTAGPVFYDHTKDVHGYSPWGSRFGASWVHKLNDNL AVAFGATYQKQKNASSSIGSWGYTDATTSRDVDGDGTVDPTPWGAADQLKLIDQTRTGAMGTVQWRSGNFELKFDGLYSR IEIDEDQLQNWFNGLAFSTFSGSTNPYTTPGSSYTIVDGDVVAGTLANSNLQVDHVVSHYNEVKTLTAGGLNAKWSGDVW TLGSDLSFSQAKRDNTWQAVRFGSNPDTISFDFRRSVTPTISTSSDTPEYGIAGQTEPQALRDKIAALALNASRAVDAGP FTSLELGARAARREKQNRRFLSNQSGYDQPISAYQDLIYPVTMPDLNVPTLTGGNMAEIARIGFGGFDPNTLDEQLLDHW NVKEDVREAFAKAVFSSQLFGTDVTGNVGVRLVNTRTTSEGFDSVGSTIQPSTGSKEYTDVLPSATLNFLIDDQRILRFA VAKVIARPPLDELRTGRRLDDPSVTVGQLTGSGGNPQLDPFKATQVDVSYEWYFHTEALAALAVYRKEVDSSIGYRTDRE TINGLDYLVSAPFNGGGGYINGVELTFQTPFYFIPHMENFGVYSNYSLVDSNLKEFSPEDNPLPLSGLARKTGTFDLWYS NGTFEARVGYKYHSPYTVVYGWNAARLARLQSEGTVDLSLNWQYSKQLGFRFQASNLTHEPLRAYTDNKPNRLANQDDGG YQVFGRRYQLEATYKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97728; Mature: 97597
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVHHTGHPASRRLRRTPVRAILCTTIACVLATAFGAHAQDTAPAAPPANDTSSAASNGQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC APVTLDNITVIGQRASLNQAVQAKQMSDHVVEVISADNMGQMPNVTVAEALVRLPGVNGT CCEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCC RDRGNESLATVRGLGPRMTMGTVNGREIASSEPNRAVRWEVFPTEIVSTVKVYKTQSADL CCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHEECCCCCE VAGGLAATVDISTISPLDYTGPGFVGTAGPVFYDHTKDVHGYSPWGSRFGASWVHKLNDN EECCEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCC LAVAFGATYQKQKNASSSIGSWGYTDATTSRDVDGDGTVDPTPWGAADQLKLIDQTRTGA EEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC MGTVQWRSGNFELKFDGLYSRIEIDEDQLQNWFNGLAFSTFSGSTNPYTTPGSSYTIVDG EEEEEEECCCEEEEECCCEEEEECCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECC DVVAGTLANSNLQVDHVVSHYNEVKTLTAGGLNAKWSGDVWTLGSDLSFSQAKRDNTWQA CEEEEEECCCCCCHHHHHHHHHHHEEEECCCCCCEECCCEEEECCCCCHHHHCCCCCEEE VRFGSNPDTISFDFRRSVTPTISTSSDTPEYGIAGQTEPQALRDKIAALALNASRAVDAG EEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCC PFTSLELGARAARREKQNRRFLSNQSGYDQPISAYQDLIYPVTMPDLNVPTLTGGNMAEI CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCCCCEECCCCHHHH ARIGFGGFDPNTLDEQLLDHWNVKEDVREAFAKAVFSSQLFGTDVTGNVGVRLVNTRTTS HHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC EGFDSVGSTIQPSTGSKEYTDVLPSATLNFLIDDQRILRFAVAKVIARPPLDELRTGRRL HHHHHHCCEECCCCCCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHCCCCC DDPSVTVGQLTGSGGNPQLDPFKATQVDVSYEWYFHTEALAALAVYRKEVDSSIGYRTDR CCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCH ETINGLDYLVSAPFNGGGGYINGVELTFQTPFYFIPHMENFGVYSNYSLVDSNLKEFSPE HHHCCCEEEEECCCCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCCHHHHCCHHHCCCC DNPLPLSGLARKTGTFDLWYSNGTFEARVGYKYHSPYTVVYGWNAARLARLQSEGTVDLS CCCCCHHHHHHCCCCEEEEECCCEEEEEECEEECCCEEEEEECCHHHHHHHCCCCCEEEE LNWQYSKQLGFRFQASNLTHEPLRAYTDNKPNRLANQDDGGYQVFGRRYQLEATYKF EEEEEHHCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECEEEEEEEEECC >Mature Secondary Structure PVHHTGHPASRRLRRTPVRAILCTTIACVLATAFGAHAQDTAPAAPPANDTSSAASNGQ CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC APVTLDNITVIGQRASLNQAVQAKQMSDHVVEVISADNMGQMPNVTVAEALVRLPGVNGT CCEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCC RDRGNESLATVRGLGPRMTMGTVNGREIASSEPNRAVRWEVFPTEIVSTVKVYKTQSADL CCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHEECCCCCE VAGGLAATVDISTISPLDYTGPGFVGTAGPVFYDHTKDVHGYSPWGSRFGASWVHKLNDN EECCEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCC LAVAFGATYQKQKNASSSIGSWGYTDATTSRDVDGDGTVDPTPWGAADQLKLIDQTRTGA EEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC MGTVQWRSGNFELKFDGLYSRIEIDEDQLQNWFNGLAFSTFSGSTNPYTTPGSSYTIVDG EEEEEEECCCEEEEECCCEEEEECCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECC DVVAGTLANSNLQVDHVVSHYNEVKTLTAGGLNAKWSGDVWTLGSDLSFSQAKRDNTWQA CEEEEEECCCCCCHHHHHHHHHHHEEEECCCCCCEECCCEEEECCCCCHHHHCCCCCEEE VRFGSNPDTISFDFRRSVTPTISTSSDTPEYGIAGQTEPQALRDKIAALALNASRAVDAG EEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCC PFTSLELGARAARREKQNRRFLSNQSGYDQPISAYQDLIYPVTMPDLNVPTLTGGNMAEI CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCCCCEECCCCHHHH ARIGFGGFDPNTLDEQLLDHWNVKEDVREAFAKAVFSSQLFGTDVTGNVGVRLVNTRTTS HHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC EGFDSVGSTIQPSTGSKEYTDVLPSATLNFLIDDQRILRFAVAKVIARPPLDELRTGRRL HHHHHHCCEECCCCCCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHCCCCC DDPSVTVGQLTGSGGNPQLDPFKATQVDVSYEWYFHTEALAALAVYRKEVDSSIGYRTDR CCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCH ETINGLDYLVSAPFNGGGGYINGVELTFQTPFYFIPHMENFGVYSNYSLVDSNLKEFSPE HHHCCCEEEEECCCCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCCHHHHCCHHHCCCC DNPLPLSGLARKTGTFDLWYSNGTFEARVGYKYHSPYTVVYGWNAARLARLQSEGTVDLS CCCCCHHHHHHCCCCEEEEECCCEEEEEECEEECCCEEEEEECCHHHHHHHCCCCCEEEE LNWQYSKQLGFRFQASNLTHEPLRAYTDNKPNRLANQDDGGYQVFGRRYQLEATYKF EEEEEHHCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA