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The map label for this gene is ypjD [H]

Identifier: 78046893

GI number: 78046893

Start: 1503495

End: 1504286

Strand: Reverse

Name: ypjD [H]

Synonym: XCV1337

Alternate gene names: 78046893

Gene position: 1504286-1503495 (Counterclockwise)

Preceding gene: 78046902

Following gene: 78046891

Centisome position: 29.05

GC content: 66.29

Gene sequence:

>792_bases
ATGACAATCGTTCTCATCGCGTTCGCCCTGTATCTGCTTGCCACGGCACTGCTCACCCGGGCGGTGTTGCGCGATGGCAA
CCAATCGCCTGCGCACTGGCTGGCGCCCGCATTGGCTGCAGTGGCCTTGCACGCCGGTTACCACGTGCTGGTGGCCGTGC
GCACCGCCGGCGGGCCGGACATGCACTTCTTCGCAGCCTTGTCGTTGTGCGGGCTGGGTATGGCTGCGCTGACGGCGGTG
TTCGGCGGCCGCGGGCGGATGGCGGCGGTGGGTGTGGTGGTGTTCCCGCTGTCGGCGATCCTGTTGGCCAGCTACCACGC
CTACGGCCATGAGCCCAGTTCGGATCTGGGCTGGCGACTCGAATTGCACGCGTGGCTGGCCTTGCTGGCCTACGCCACGC
TGGGCATCGCGGCGCTGCTGGCAATCATGCTGTGGCTGCAGGAACGCGCGTTGCGGCGGCGCGATTTCCATAGCTGGCTA
CGCGCACTGCCACCGCTGACCGAGCTGGAAACGCTGCTGTTCCGCACGATCACGGTGGGCTTTGTGCTGTTGAGCCTGAC
CCTGCTGACCGGCCTGTTGTTCGTGCAGGACTTCCTGGCGCAGCGGCTGTTGCAAAAGACCGTGCTGAGCATCCTGTCGT
GGATCGTGTTCGGTGCGCTGCTGATCGGCCGCTGGCGCAATGGCTGGCGCGGCACCAAGGCGGTGCACTGGACGCTGACC
GCGATGGCGCTGCTGGTGCTGTCGTTCTTCGGCAGCAAGTTCGTCATCGAGCTGGTGCTGGGGCCGCGTTGA

Upstream 100 bases:

>100_bases
TTCCCGATTCCCGATTCCCCAATCCCTAATCCCCAATCCCTAATCCCCAATCCCCAATCCCCAATCCCCAATCCCGGCCC
CACCATGCGAAACTTCCACG

Downstream 100 bases:

>100_bases
GCGCGGTTGGCCTAGCCCAGCGTCTCTGATGTGAAATCGAACACGGCGAAGTGCGATCGCCTGGATTGCACATCCTGGCC
GGTGCGCTGGCCGCGCGCAT

Product: putative cytochrome C assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTIVLIAFALYLLATALLTRAVLRDGNQSPAHWLAPALAAVALHAGYHVLVAVRTAGGPDMHFFAALSLCGLGMAALTAV
FGGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRLELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWL
RALPPLTELETLLFRTITVGFVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLT
AMALLVLSFFGSKFVIELVLGPR

Sequences:

>Translated_263_residues
MTIVLIAFALYLLATALLTRAVLRDGNQSPAHWLAPALAAVALHAGYHVLVAVRTAGGPDMHFFAALSLCGLGMAALTAV
FGGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRLELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWL
RALPPLTELETLLFRTITVGFVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLT
AMALLVLSFFGSKFVIELVLGPR
>Mature_262_residues
TIVLIAFALYLLATALLTRAVLRDGNQSPAHWLAPALAAVALHAGYHVLVAVRTAGGPDMHFFAALSLCGLGMAALTAVF
GGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRLELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWLR
ALPPLTELETLLFRTITVGFVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLTA
MALLVLSFFGSKFVIELVLGPR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=258, Percent_Identity=27.906976744186, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28744; Mature: 28613

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVLIAFALYLLATALLTRAVLRDGNQSPAHWLAPALAAVALHAGYHVLVAVRTAGGPD
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHEEEEEECCCCCC
MHFFAALSLCGLGMAALTAVFGGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWLRALPPLTELETLLFRTITVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AMALLVLSFFGSKFVIELVLGPR
HHHHHHHHHHCHHHHHHHHCCCC
>Mature Secondary Structure 
TIVLIAFALYLLATALLTRAVLRDGNQSPAHWLAPALAAVALHAGYHVLVAVRTAGGPD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHEEEEEECCCCCC
MHFFAALSLCGLGMAALTAVFGGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWLRALPPLTELETLLFRTITVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AMALLVLSFFGSKFVIELVLGPR
HHHHHHHHHHCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]