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The map label for this gene is yagT [H]

Identifier: 78046772

GI number: 78046772

Start: 1363629

End: 1364207

Strand: Reverse

Name: yagT [H]

Synonym: XCV1216

Alternate gene names: 78046772

Gene position: 1364207-1363629 (Counterclockwise)

Preceding gene: 78046777

Following gene: 78046771

Centisome position: 26.34

GC content: 65.8

Gene sequence:

>579_bases
ATGACTGCCACACCCGCCACTGCCCATGACACGGCGCCGGCCACTGCCACCACCAGTGCGCCGACCTACCCGGTCAACCT
GCGCATCAACGCTCAGCCGTATCACTTGCAGCTCGAAGCCTGGGTGAGCCTGCTCGACCTGCTGCGCGACCGCCTCGACC
TCACCGGCACCAAGAAAGGCTGCGACCATGGCCAATGCGGCGCTTGCACGGTGCTGGTCGATGGCCGCCGCATCAACAGC
TGCCTGACCCTGGCCGTCATGCAGGACGGCGCCGACATCACCACCGTCGAAGGGCTGGCCGATGGCGACGCACTGCATCC
GCTGCAACGCGCCTTCATCGCCAACGATGCATTTCAGTGCGGTTACTGCACTCCGGGGCAGCTGTGCTCGGCCGTGGGCT
TGATCAACGAAGGCAAGGCGCACGACCGCGACCAGGTACGTGAACTGATGAGCGGCAATATCTGCCGTTGCGGTGCCTAT
CCGCAGATCACCGATGCCGTGATGGAGGTGATGGGCAAGCCCAGCGACAGCAGCGACAGCGCGGCCACTCCGTGGACGCC
CGGGACGGTGCCGGCATGA

Upstream 100 bases:

>100_bases
CGCGTCGCATCGGTGCCAATCGTAGCCGTGGTCACTTTGCGTTGACCACAGCGCCGTCAAGGTGGTGGTCCTTCTCCTCA
GCCATCGCCACGGGGTTCGC

Downstream 100 bases:

>100_bases
TTCCGCTCACCTACACACGCCCGGACACCGTCGATGCGGCGCTTGGCGCCATTGCAGTGCGCAGCGGCGACACGCAGCCG
GTGCCCTCCGAGGCACCGGT

Product: putative xanthine dehydrogenase, iron-sulfur binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTATPATAHDTAPATATTSAPTYPVNLRINAQPYHLQLEAWVSLLDLLRDRLDLTGTKKGCDHGQCGACTVLVDGRRINS
CLTLAVMQDGADITTVEGLADGDALHPLQRAFIANDAFQCGYCTPGQLCSAVGLINEGKAHDRDQVRELMSGNICRCGAY
PQITDAVMEVMGKPSDSSDSAATPWTPGTVPA

Sequences:

>Translated_192_residues
MTATPATAHDTAPATATTSAPTYPVNLRINAQPYHLQLEAWVSLLDLLRDRLDLTGTKKGCDHGQCGACTVLVDGRRINS
CLTLAVMQDGADITTVEGLADGDALHPLQRAFIANDAFQCGYCTPGQLCSAVGLINEGKAHDRDQVRELMSGNICRCGAY
PQITDAVMEVMGKPSDSSDSAATPWTPGTVPA
>Mature_191_residues
TATPATAHDTAPATATTSAPTYPVNLRINAQPYHLQLEAWVSLLDLLRDRLDLTGTKKGCDHGQCGACTVLVDGRRINSC
LTLAVMQDGADITTVEGLADGDALHPLQRAFIANDAFQCGYCTPGQLCSAVGLINEGKAHDRDQVRELMSGNICRCGAYP
QITDAVMEVMGKPSDSSDSAATPWTPGTVPA

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=89, Percent_Identity=37.0786516853933, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1786480, Length=183, Percent_Identity=51.9125683060109, Blast_Score=187, Evalue=5e-49,
Organism=Escherichia coli, GI1789232, Length=152, Percent_Identity=38.1578947368421, Blast_Score=110, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI32566215, Length=136, Percent_Identity=33.8235294117647, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17540638, Length=135, Percent_Identity=36.2962962962963, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17539860, Length=136, Percent_Identity=33.0882352941176, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24647197, Length=179, Percent_Identity=34.0782122905028, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24647195, Length=179, Percent_Identity=34.0782122905028, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24647199, Length=149, Percent_Identity=38.255033557047, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17737937, Length=134, Percent_Identity=38.0597014925373, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24647201, Length=148, Percent_Identity=36.4864864864865, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24647193, Length=156, Percent_Identity=33.974358974359, Blast_Score=83, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 20259; Mature: 20128

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATPATAHDTAPATATTSAPTYPVNLRINAQPYHLQLEAWVSLLDLLRDRLDLTGTKKG
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCC
CDHGQCGACTVLVDGRRINSCLTLAVMQDGADITTVEGLADGDALHPLQRAFIANDAFQC
CCCCCCCEEEEEECCCCCCHHEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
GYCTPGQLCSAVGLINEGKAHDRDQVRELMSGNICRCGAYPQITDAVMEVMGKPSDSSDS
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCCC
AATPWTPGTVPA
CCCCCCCCCCCC
>Mature Secondary Structure 
TATPATAHDTAPATATTSAPTYPVNLRINAQPYHLQLEAWVSLLDLLRDRLDLTGTKKG
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCC
CDHGQCGACTVLVDGRRINSCLTLAVMQDGADITTVEGLADGDALHPLQRAFIANDAFQC
CCCCCCCEEEEEECCCCCCHHEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
GYCTPGQLCSAVGLINEGKAHDRDQVRELMSGNICRCGAYPQITDAVMEVMGKPSDSSDS
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCCC
AATPWTPGTVPA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]