| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is lcfB [H]
Identifier: 78046472
GI number: 78046472
Start: 1045099
End: 1046577
Strand: Reverse
Name: lcfB [H]
Synonym: XCV0916
Alternate gene names: 78046472
Gene position: 1046577-1045099 (Counterclockwise)
Preceding gene: 78046473
Following gene: 78046468
Centisome position: 20.21
GC content: 65.58
Gene sequence:
>1479_bases ATGGCCATGCCGACCGATTCGATCGCCTTCCACGCCCGTCTCTCGCCGCAACAGTTTGCCGCACGCGACCTAGTGCTGGG CCTGAAATGGTCCTATGCCGAACTGGACGCCTTGGTGGGCCGCCTGGCGGCCTTGTTGCGCCGGCGTGGCTGCGTCGATG GAGAGCGGCTCGCCGTGCTGGCGCGCAATTCGGTGTGGCAGGTGGCCTTGCACTTTGCCTGCGGGCGGGTCGGCGCGATC TATGTACCGCTCAACTGGCGGTTGAGCGCAAGCGAGCTCGATGCGCTGCTGCAACGCGCAGAGCCACGCGTATTGCTGGG CGACGATGTCGCTGCCGGTCGCACGGACATGGAAGCCTTGGCAGGCTTTATCGCGAGCGCCGATGCACTGGAGCCTGCCG ACACGCCATCGATTCCGCCGGATCGTGTCAGCCTGATCCTGTTTACCTCCGGCACCTCGGGTCAGCCCAAGGGCGTGATG CTCAGCGAGCAGAACCTGCAGCATGCCGCGCATAACTTCGGCGTCACCACACGCGTGGACGCACGCAGCAGCTTTCTGTG CGAAGCGCCGATGTTCCACATCATCGGCCTGGTCACCAATGTGCGCTCGGCGCTGGCGGTGGGCGGTTCGATCCAGGTCT CCAATGGCTTCGAGCCCAAACGCTCGTTGGGCTGGCTTGCCGATCCATCGCTGGGAATCACGCATTACGTCGGCGTGCCG CAGATGATGCAGGCATTTCGCAATCAGCCCGGCTTCGATGCCGCAGCGCTGCGCCACCTCACCGCATTGGTCAGCGGCGG CGCGCCGCACGCCAGCGACGATCTGCTTGGCTGGCTGGACGATGGCATCCCGATGGTCTGCGGCTTCGGCATGAGCGAAG CCGGCACGGTGTTCGGCATGTCGGTGGACTGCGATGTGATCCGCAACAAGCTGGGCGCGGCCGGCATCGCAACGCCATCG GTGCAGACGCGCGTGGTCGATGACCACGGCAACGACTGCCCGGCGGGCGTTCCCGGTGAATTGCTCTTGCGCGGTCCCAA CCTCAGCCCCGGTTACTGGCGCGACCCGCACGCGAGCGCCGACGTGCTCGATGGGCAGGGCTGGTTCCGTACCGGCGATA TCGTGCAGCGCGATGCCGACGGCTTCTTCTGGGTCGTCGACCGCAAGAAGGACATGTTCATTTCCGGCGGCGAGAACGTG TACCCGGCAGAGATCGAAGCGTTGCTCGCAGACCATCCGGACATCCGCGAGTGCGCAGTGGTCGGCCTGGCCGACCCGCA GTGGGGCGAGGTGGGCTATCTGGCGATCGTGCCGGCCGCTGCGGCGCCGGACCTGGAGGAGATCCGCACCTATCTGACCG CACGGCTGGCCAAGTACAAGGTGCCCAAGCATCTGCGGTTGGTGGATGCCTTGCCGCGCACGGCGACCGGCAAATTACAA AAAGCGCGCTTGAAGGACACCTTGGCCAGTGACACCTGA
Upstream 100 bases:
>100_bases TCCGCCACGTGCGCATCACGTTCTCCGGGACATCTAAACCTTTCGCACGCAGCACTCGCACTCACACCAGTCACTTCCCA CTCTTCCAGAAGACCGCGCC
Downstream 100 bases:
>100_bases GGTGCCGTCGCATCGGGCGCGCATGCGCACCGCCAACTGCAACGGGCAGCCTGGGCTGCCCGTTGCTGTGGCGCGGCGCA CGACCCGCCGTGTGCAGCCG
Product: acyl-CoA synthetase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MAMPTDSIAFHARLSPQQFAARDLVLGLKWSYAELDALVGRLAALLRRRGCVDGERLAVLARNSVWQVALHFACGRVGAI YVPLNWRLSASELDALLQRAEPRVLLGDDVAAGRTDMEALAGFIASADALEPADTPSIPPDRVSLILFTSGTSGQPKGVM LSEQNLQHAAHNFGVTTRVDARSSFLCEAPMFHIIGLVTNVRSALAVGGSIQVSNGFEPKRSLGWLADPSLGITHYVGVP QMMQAFRNQPGFDAAALRHLTALVSGGAPHASDDLLGWLDDGIPMVCGFGMSEAGTVFGMSVDCDVIRNKLGAAGIATPS VQTRVVDDHGNDCPAGVPGELLLRGPNLSPGYWRDPHASADVLDGQGWFRTGDIVQRDADGFFWVVDRKKDMFISGGENV YPAEIEALLADHPDIRECAVVGLADPQWGEVGYLAIVPAAAAPDLEEIRTYLTARLAKYKVPKHLRLVDALPRTATGKLQ KARLKDTLASDT
Sequences:
>Translated_492_residues MAMPTDSIAFHARLSPQQFAARDLVLGLKWSYAELDALVGRLAALLRRRGCVDGERLAVLARNSVWQVALHFACGRVGAI YVPLNWRLSASELDALLQRAEPRVLLGDDVAAGRTDMEALAGFIASADALEPADTPSIPPDRVSLILFTSGTSGQPKGVM LSEQNLQHAAHNFGVTTRVDARSSFLCEAPMFHIIGLVTNVRSALAVGGSIQVSNGFEPKRSLGWLADPSLGITHYVGVP QMMQAFRNQPGFDAAALRHLTALVSGGAPHASDDLLGWLDDGIPMVCGFGMSEAGTVFGMSVDCDVIRNKLGAAGIATPS VQTRVVDDHGNDCPAGVPGELLLRGPNLSPGYWRDPHASADVLDGQGWFRTGDIVQRDADGFFWVVDRKKDMFISGGENV YPAEIEALLADHPDIRECAVVGLADPQWGEVGYLAIVPAAAAPDLEEIRTYLTARLAKYKVPKHLRLVDALPRTATGKLQ KARLKDTLASDT >Mature_491_residues AMPTDSIAFHARLSPQQFAARDLVLGLKWSYAELDALVGRLAALLRRRGCVDGERLAVLARNSVWQVALHFACGRVGAIY VPLNWRLSASELDALLQRAEPRVLLGDDVAAGRTDMEALAGFIASADALEPADTPSIPPDRVSLILFTSGTSGQPKGVML SEQNLQHAAHNFGVTTRVDARSSFLCEAPMFHIIGLVTNVRSALAVGGSIQVSNGFEPKRSLGWLADPSLGITHYVGVPQ MMQAFRNQPGFDAAALRHLTALVSGGAPHASDDLLGWLDDGIPMVCGFGMSEAGTVFGMSVDCDVIRNKLGAAGIATPSV QTRVVDDHGNDCPAGVPGELLLRGPNLSPGYWRDPHASADVLDGQGWFRTGDIVQRDADGFFWVVDRKKDMFISGGENVY PAEIEALLADHPDIRECAVVGLADPQWGEVGYLAIVPAAAAPDLEEIRTYLTARLAKYKVPKHLRLVDALPRTATGKLQK ARLKDTLASDT
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=531, Percent_Identity=25.8003766478343, Blast_Score=181, Evalue=1e-45, Organism=Homo sapiens, GI187761345, Length=507, Percent_Identity=26.8244575936884, Blast_Score=146, Evalue=4e-35, Organism=Homo sapiens, GI187761343, Length=507, Percent_Identity=26.8244575936884, Blast_Score=146, Evalue=4e-35, Organism=Homo sapiens, GI42544132, Length=504, Percent_Identity=26.1904761904762, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI58082049, Length=502, Percent_Identity=25.8964143426295, Blast_Score=133, Evalue=3e-31, Organism=Homo sapiens, GI157311624, Length=502, Percent_Identity=25.4980079681275, Blast_Score=132, Evalue=9e-31, Organism=Homo sapiens, GI157311622, Length=502, Percent_Identity=25.4980079681275, Blast_Score=132, Evalue=9e-31, Organism=Homo sapiens, GI38505220, Length=503, Percent_Identity=26.8389662027833, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI122937307, Length=502, Percent_Identity=26.0956175298805, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI115511026, Length=503, Percent_Identity=25.4473161033797, Blast_Score=123, Evalue=4e-28, Organism=Homo sapiens, GI28416953, Length=549, Percent_Identity=24.408014571949, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI40807357, Length=514, Percent_Identity=24.124513618677, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI38524616, Length=528, Percent_Identity=23.6742424242424, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI8923896, Length=368, Percent_Identity=24.4565217391304, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI253970489, Length=368, Percent_Identity=24.4565217391304, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI57165412, Length=340, Percent_Identity=27.9411764705882, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI13325057, Length=374, Percent_Identity=25.668449197861, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI57165410, Length=339, Percent_Identity=27.4336283185841, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI27477105, Length=344, Percent_Identity=24.4186046511628, Blast_Score=81, Evalue=3e-15, Organism=Homo sapiens, GI13375727, Length=533, Percent_Identity=22.1388367729831, Blast_Score=79, Evalue=9e-15, Organism=Homo sapiens, GI40807491, Length=363, Percent_Identity=25.3443526170799, Blast_Score=78, Evalue=2e-14, Organism=Escherichia coli, GI145693145, Length=511, Percent_Identity=28.7671232876712, Blast_Score=199, Evalue=3e-52, Organism=Escherichia coli, GI1788107, Length=358, Percent_Identity=30.7262569832402, Blast_Score=177, Evalue=2e-45, Organism=Escherichia coli, GI221142682, Length=487, Percent_Identity=27.1047227926078, Blast_Score=169, Evalue=5e-43, Organism=Escherichia coli, GI1786810, Length=498, Percent_Identity=27.5100401606426, Blast_Score=139, Evalue=5e-34, Organism=Escherichia coli, GI1788595, Length=456, Percent_Identity=25.4385964912281, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790505, Length=370, Percent_Identity=25.9459459459459, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1789201, Length=370, Percent_Identity=25.6756756756757, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1786801, Length=413, Percent_Identity=24.9394673123487, Blast_Score=79, Evalue=8e-16, Organism=Escherichia coli, GI1786529, Length=523, Percent_Identity=21.414913957935, Blast_Score=78, Evalue=1e-15, Organism=Caenorhabditis elegans, GI32563687, Length=479, Percent_Identity=26.9311064718163, Blast_Score=183, Evalue=2e-46, Organism=Caenorhabditis elegans, GI17558820, Length=486, Percent_Identity=27.1604938271605, Blast_Score=172, Evalue=4e-43, Organism=Caenorhabditis elegans, GI71994690, Length=358, Percent_Identity=27.3743016759777, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI71994694, Length=358, Percent_Identity=27.3743016759777, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI71994703, Length=358, Percent_Identity=27.3743016759777, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17560308, Length=527, Percent_Identity=25.2371916508539, Blast_Score=134, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17531443, Length=363, Percent_Identity=26.9972451790634, Blast_Score=131, Evalue=7e-31, Organism=Caenorhabditis elegans, GI71985884, Length=352, Percent_Identity=28.4090909090909, Blast_Score=128, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17559526, Length=374, Percent_Identity=28.0748663101604, Blast_Score=126, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17557194, Length=399, Percent_Identity=26.3157894736842, Blast_Score=125, Evalue=4e-29, Organism=Caenorhabditis elegans, GI71996755, Length=475, Percent_Identity=24.8421052631579, Blast_Score=120, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17538037, Length=399, Percent_Identity=25.8145363408521, Blast_Score=108, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17564090, Length=422, Percent_Identity=24.4075829383886, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17553312, Length=342, Percent_Identity=25.7309941520468, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560140, Length=424, Percent_Identity=24.2924528301887, Blast_Score=82, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6319699, Length=353, Percent_Identity=30.3116147308782, Blast_Score=154, Evalue=3e-38, Organism=Saccharomyces cerevisiae, GI6319264, Length=375, Percent_Identity=25.0666666666667, Blast_Score=90, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6320852, Length=201, Percent_Identity=32.3383084577114, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6323182, Length=539, Percent_Identity=22.2634508348794, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323903, Length=374, Percent_Identity=24.5989304812834, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324893, Length=152, Percent_Identity=28.2894736842105, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24581924, Length=364, Percent_Identity=31.5934065934066, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI18859661, Length=362, Percent_Identity=30.1104972375691, Blast_Score=150, Evalue=1e-36, Organism=Drosophila melanogaster, GI21355181, Length=508, Percent_Identity=27.755905511811, Blast_Score=142, Evalue=5e-34, Organism=Drosophila melanogaster, GI24648253, Length=503, Percent_Identity=24.6520874751491, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI21356947, Length=475, Percent_Identity=25.6842105263158, Blast_Score=132, Evalue=4e-31, Organism=Drosophila melanogaster, GI21356441, Length=498, Percent_Identity=25.3012048192771, Blast_Score=132, Evalue=6e-31, Organism=Drosophila melanogaster, GI24648255, Length=502, Percent_Identity=24.3027888446215, Blast_Score=131, Evalue=1e-30, Organism=Drosophila melanogaster, GI24653035, Length=490, Percent_Identity=23.8775510204082, Blast_Score=125, Evalue=4e-29, Organism=Drosophila melanogaster, GI21358303, Length=460, Percent_Identity=24.3478260869565, Blast_Score=125, Evalue=9e-29, Organism=Drosophila melanogaster, GI281365686, Length=505, Percent_Identity=23.7623762376238, Blast_Score=118, Evalue=7e-27, Organism=Drosophila melanogaster, GI24648257, Length=475, Percent_Identity=25.8947368421053, Blast_Score=116, Evalue=4e-26, Organism=Drosophila melanogaster, GI161076582, Length=485, Percent_Identity=23.7113402061856, Blast_Score=115, Evalue=1e-25, Organism=Drosophila melanogaster, GI19922652, Length=496, Percent_Identity=23.991935483871, Blast_Score=108, Evalue=8e-24, Organism=Drosophila melanogaster, GI24648260, Length=475, Percent_Identity=23.7894736842105, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI20130357, Length=487, Percent_Identity=21.9712525667351, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI62472339, Length=368, Percent_Identity=24.4565217391304, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI24667959, Length=368, Percent_Identity=24.4565217391304, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI24667955, Length=368, Percent_Identity=24.4565217391304, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI20130353, Length=522, Percent_Identity=23.3716475095785, Blast_Score=92, Evalue=6e-19, Organism=Drosophila melanogaster, GI28573631, Length=522, Percent_Identity=23.3716475095785, Blast_Score=92, Evalue=7e-19, Organism=Drosophila melanogaster, GI24656500, Length=442, Percent_Identity=24.2081447963801, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI221329755, Length=97, Percent_Identity=38.1443298969072, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 52726; Mature: 52595
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMPTDSIAFHARLSPQQFAARDLVLGLKWSYAELDALVGRLAALLRRRGCVDGERLAVL CCCCCCCEEEEEECCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE ARNSVWQVALHFACGRVGAIYVPLNWRLSASELDALLQRAEPRVLLGDDVAAGRTDMEAL ECCCHHHHHHHHHCCCCCEEEEEECCEECHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH AGFIASADALEPADTPSIPPDRVSLILFTSGTSGQPKGVMLSEQNLQHAAHNFGVTTRVD HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCEEEEC ARSSFLCEAPMFHIIGLVTNVRSALAVGGSIQVSNGFEPKRSLGWLADPSLGITHYVGVP CCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCCCCCCEEECCCH QMMQAFRNQPGFDAAALRHLTALVSGGAPHASDDLLGWLDDGIPMVCGFGMSEAGTVFGM HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCEEEEE SVDCDVIRNKLGAAGIATPSVQTRVVDDHGNDCPAGVPGELLLRGPNLSPGYWRDPHASA ECCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC DVLDGQGWFRTGDIVQRDADGFFWVVDRKKDMFISGGENVYPAEIEALLADHPDIRECAV CEECCCCCEECCCHHEECCCCEEEEEECCCCEEEECCCCCCHHHHHHHHCCCCCCCCEEE VGLADPQWGEVGYLAIVPAAAAPDLEEIRTYLTARLAKYKVPKHLRLVDALPRTATGKLQ EECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH KARLKDTLASDT HHHHHHHHCCCC >Mature Secondary Structure AMPTDSIAFHARLSPQQFAARDLVLGLKWSYAELDALVGRLAALLRRRGCVDGERLAVL CCCCCCEEEEEECCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE ARNSVWQVALHFACGRVGAIYVPLNWRLSASELDALLQRAEPRVLLGDDVAAGRTDMEAL ECCCHHHHHHHHHCCCCCEEEEEECCEECHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH AGFIASADALEPADTPSIPPDRVSLILFTSGTSGQPKGVMLSEQNLQHAAHNFGVTTRVD HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCEEEEC ARSSFLCEAPMFHIIGLVTNVRSALAVGGSIQVSNGFEPKRSLGWLADPSLGITHYVGVP CCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCCCCCCEEECCCH QMMQAFRNQPGFDAAALRHLTALVSGGAPHASDDLLGWLDDGIPMVCGFGMSEAGTVFGM HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCEEEEE SVDCDVIRNKLGAAGIATPSVQTRVVDDHGNDCPAGVPGELLLRGPNLSPGYWRDPHASA ECCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC DVLDGQGWFRTGDIVQRDADGFFWVVDRKKDMFISGGENVYPAEIEALLADHPDIRECAV CEECCCCCEECCCHHEECCCCEEEEEECCCCEEEECCCCCCHHHHHHHHCCCCCCCCEEE VGLADPQWGEVGYLAIVPAAAAPDLEEIRTYLTARLAKYKVPKHLRLVDALPRTATGKLQ EECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH KARLKDTLASDT HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]