| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is ostA [H]
Identifier: 78046459
GI number: 78046459
Start: 1031575
End: 1034004
Strand: Reverse
Name: ostA [H]
Synonym: XCV0903
Alternate gene names: 78046459
Gene position: 1034004-1031575 (Counterclockwise)
Preceding gene: 78046460
Following gene: 78046458
Centisome position: 19.97
GC content: 63.21
Gene sequence:
>2430_bases GTGCGCCGAGCTCTCCGCCTGCTGCCCCTGCCTTTGAGCATCGCCATCTGCCTCCCGGCCATGGCTGCCGACAAGCCGTT GAACTGGGGACTGTGCCCGGCCGTAGACCCGCTACCCGGCTTCGACGGCGCCCCCGCCGCCGACCCCAAGGCCGCAGAAA TGCGCCAGCAGTTGCCGACCGACATCGAAGGCGACCAACTCTCCGGCACCAGCACCACCCCGCAATACCAAGGCAATGTT GCGTTGAAGCGCGGCGACCAGTTCCTGGGTGCCGACAACCTGCGCATGGACACCGAAACCGGCAACTACATCGCCGAAGG CAATGTCCGCTACCAGGACACCTCTTTCCGCATGGTCGCCGACCGCGCCGAGGGCAATCAGGACACCGACACCCACAAGG TCACCAACATCCAGTACCAGTTGGTGGAGCGCCGCGGCAATGGCGACGCCGAATCGGTGGACCTGCAGGGCCAGGTCGGG CAGATGCATCGGTCCACGTACACCACCTGCGACCCCTCGCAGCCGATCTGGCGCGTTCGCGCGCCGGAGATCGACGTCGA CAACGAGGAAGGTTTCGGTACCGCGCGCAACGCGGTGCTGCAGATCGGCAAGGTGCCGGTGCTGTACTTCCCGTGGTTCA AGTTCCCGATCGACGACCGCCGCCAGACCGGCCTGCTGTTTCCGCAATTCGGTCTGTCCGGTCGTAACGGCTTCGACTAC CTGCAGCCGATCTATCTGAACCTGGCGCCGAACTACGACGCCACGTTGTTGCCGCGCTACATGAGCAAGCGCGGTTTCAT GTTCGGCACCGAATTCCGGTACCTGTACGAGGGCGGTCGCGGCGAAGTCACCGGCAACTACCTGCCCAACGACAAGTTGC GCGACAAGGACCGTGGCAGCGTGTTCTACAGCGGCTACCACAACGTCAACAGCAATTGGCAGGCGCGCAGTAGCATCTCC TGGGTCAGCGACACGCGCTACGTGGAAGATTTCACCAGCCGCATCAACGGCATGGGCTCGGCCTCCAGCCTGCAGAGCAC CGTGGGCATCTACGGCACCGGCGAGACCTGGACCGCGGGCCTGATGGCCGACCGTTGGCAGCTCACCGACTACACGCTGG ACGAGCAGGCCCTGCCCTATAACCGGCAGCCGCGCGCGTATTTCACCTGGGAAAAGCCGCTGGGCATTTTCGAGGCCGGT ATCTATGCCGAGGCAGTGCGGTTTACGCATGATGACTCTTACTTCGTCAGGCCGCCGATCAGTGGCAGCAGCAGGGATGA CAACGAAGACGAGTACGTCCGTACCAATATCCGCAACAAGCAATACGGCAGCGGCGCGCGCCTGGACGTCAAGCCGTACA TCTCGATGCCGCTGTCGGGCGCAGCATGGTTCCTGACGCCCACCGTGGCGTGGCGCTACACCGCGTACCAGCTGGATTCC ACGCTGGCCGATACCGCACCGCTGACCGGCAACCGCACGCCCACGCGCAGCCTGCCGATCGCCTCGCTGGACGCAGGCCT GTACTTCGATCGCGAAACCTCGCTGTTTGGCACCAACTATCTCAATACGTTGGAGCCGCGCATGTACTACCTGTACGTGC CGTACCGCGACCAGGACGATCTGCCGGTGTTCGATACCCGTCCGTTCACCTTCAGCTACGGGCAGCTGTTCCGCGACACC CGCTATACCGGCGCCGACCGCCAAAACGATGCCAACCAGCTGACCCTGGCAGTGACCTCGCGCTGGCTGCGCCAGGACGA CGGCCGCGAAAAGCTTTCGCTGAGCGCGGGCCAGATCCTGTACTTCAGCGACTCGCTGGTCACCATCAACAACAGCAACA ACTCAGCAGCCGGCAGCGAGCAGACCGTCGAACAGGGCAAGTCCGCCTGGGTGGCCGACGCCAACTACATGATCAACGAC CGCTGGTCGATGGGCGCCACCTACCAGTGGAACCCGAACTCGCGCAAGGAAGATCTGGCCAGCCTGCGCACGCGCTATCT GCTCAACAACGACGGCATCATCAACCTGGCGTATCGCTACCGTCGCAACCTCACCGACAACAGCGACCAGCTCAAGCAGG CCGATTTCTCCTTCCTGTACCCGATCAACCCCAGCTGGAGCGCGGTCGGTCGGTACTACTACTCGCTGCTGGACCGCAAG CCGCTGGAAATCATCGGTGGCGTGCAATGGGACAGCTGCTGCCTGGCGGTACGCGGGCTGGTGCGCCGGTTCGTGCGCAA CCGCGATGGCGAGATGGACAACTCGATCCAGATTGAGTTCGTGCTGAAGGGCTTGAGCTCGTTCGGGCAGAACACGGACC GCACTTTGCGCCGTGCTATTCTCGGCTATTACCGCGACGACCTCTACCTGGTCCCGCCCAGTAACACCACGACCAATCCG GACGATTACGATCCGAACCTGATTCCATGA
Upstream 100 bases:
>100_bases CGAGTGCGATGAACCTCGCCCTCCCGGCGCCGGCGCTCTTCATTGCCCCTATGCGGGGTATGCGGCAAGCTAGTCGCCAT TTTATTGGTTGAACCCACGC
Downstream 100 bases:
>100_bases CCAAGCCTTTCTCTGTTGTTCTTGCCTCGCTGCTGGCCATCACCAGCACGGTTTCGCCGTTGGCCTCGGCACAGCAATCC CAGCCGCTGGATCGCATCGC
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MRRALRLLPLPLSIAICLPAMAADKPLNWGLCPAVDPLPGFDGAPAADPKAAEMRQQLPTDIEGDQLSGTSTTPQYQGNV ALKRGDQFLGADNLRMDTETGNYIAEGNVRYQDTSFRMVADRAEGNQDTDTHKVTNIQYQLVERRGNGDAESVDLQGQVG QMHRSTYTTCDPSQPIWRVRAPEIDVDNEEGFGTARNAVLQIGKVPVLYFPWFKFPIDDRRQTGLLFPQFGLSGRNGFDY LQPIYLNLAPNYDATLLPRYMSKRGFMFGTEFRYLYEGGRGEVTGNYLPNDKLRDKDRGSVFYSGYHNVNSNWQARSSIS WVSDTRYVEDFTSRINGMGSASSLQSTVGIYGTGETWTAGLMADRWQLTDYTLDEQALPYNRQPRAYFTWEKPLGIFEAG IYAEAVRFTHDDSYFVRPPISGSSRDDNEDEYVRTNIRNKQYGSGARLDVKPYISMPLSGAAWFLTPTVAWRYTAYQLDS TLADTAPLTGNRTPTRSLPIASLDAGLYFDRETSLFGTNYLNTLEPRMYYLYVPYRDQDDLPVFDTRPFTFSYGQLFRDT RYTGADRQNDANQLTLAVTSRWLRQDDGREKLSLSAGQILYFSDSLVTINNSNNSAAGSEQTVEQGKSAWVADANYMIND RWSMGATYQWNPNSRKEDLASLRTRYLLNNDGIINLAYRYRRNLTDNSDQLKQADFSFLYPINPSWSAVGRYYYSLLDRK PLEIIGGVQWDSCCLAVRGLVRRFVRNRDGEMDNSIQIEFVLKGLSSFGQNTDRTLRRAILGYYRDDLYLVPPSNTTTNP DDYDPNLIP
Sequences:
>Translated_809_residues MRRALRLLPLPLSIAICLPAMAADKPLNWGLCPAVDPLPGFDGAPAADPKAAEMRQQLPTDIEGDQLSGTSTTPQYQGNV ALKRGDQFLGADNLRMDTETGNYIAEGNVRYQDTSFRMVADRAEGNQDTDTHKVTNIQYQLVERRGNGDAESVDLQGQVG QMHRSTYTTCDPSQPIWRVRAPEIDVDNEEGFGTARNAVLQIGKVPVLYFPWFKFPIDDRRQTGLLFPQFGLSGRNGFDY LQPIYLNLAPNYDATLLPRYMSKRGFMFGTEFRYLYEGGRGEVTGNYLPNDKLRDKDRGSVFYSGYHNVNSNWQARSSIS WVSDTRYVEDFTSRINGMGSASSLQSTVGIYGTGETWTAGLMADRWQLTDYTLDEQALPYNRQPRAYFTWEKPLGIFEAG IYAEAVRFTHDDSYFVRPPISGSSRDDNEDEYVRTNIRNKQYGSGARLDVKPYISMPLSGAAWFLTPTVAWRYTAYQLDS TLADTAPLTGNRTPTRSLPIASLDAGLYFDRETSLFGTNYLNTLEPRMYYLYVPYRDQDDLPVFDTRPFTFSYGQLFRDT RYTGADRQNDANQLTLAVTSRWLRQDDGREKLSLSAGQILYFSDSLVTINNSNNSAAGSEQTVEQGKSAWVADANYMIND RWSMGATYQWNPNSRKEDLASLRTRYLLNNDGIINLAYRYRRNLTDNSDQLKQADFSFLYPINPSWSAVGRYYYSLLDRK PLEIIGGVQWDSCCLAVRGLVRRFVRNRDGEMDNSIQIEFVLKGLSSFGQNTDRTLRRAILGYYRDDLYLVPPSNTTTNP DDYDPNLIP >Mature_809_residues MRRALRLLPLPLSIAICLPAMAADKPLNWGLCPAVDPLPGFDGAPAADPKAAEMRQQLPTDIEGDQLSGTSTTPQYQGNV ALKRGDQFLGADNLRMDTETGNYIAEGNVRYQDTSFRMVADRAEGNQDTDTHKVTNIQYQLVERRGNGDAESVDLQGQVG QMHRSTYTTCDPSQPIWRVRAPEIDVDNEEGFGTARNAVLQIGKVPVLYFPWFKFPIDDRRQTGLLFPQFGLSGRNGFDY LQPIYLNLAPNYDATLLPRYMSKRGFMFGTEFRYLYEGGRGEVTGNYLPNDKLRDKDRGSVFYSGYHNVNSNWQARSSIS WVSDTRYVEDFTSRINGMGSASSLQSTVGIYGTGETWTAGLMADRWQLTDYTLDEQALPYNRQPRAYFTWEKPLGIFEAG IYAEAVRFTHDDSYFVRPPISGSSRDDNEDEYVRTNIRNKQYGSGARLDVKPYISMPLSGAAWFLTPTVAWRYTAYQLDS TLADTAPLTGNRTPTRSLPIASLDAGLYFDRETSLFGTNYLNTLEPRMYYLYVPYRDQDDLPVFDTRPFTFSYGQLFRDT RYTGADRQNDANQLTLAVTSRWLRQDDGREKLSLSAGQILYFSDSLVTINNSNNSAAGSEQTVEQGKSAWVADANYMIND RWSMGATYQWNPNSRKEDLASLRTRYLLNNDGIINLAYRYRRNLTDNSDQLKQADFSFLYPINPSWSAVGRYYYSLLDRK PLEIIGGVQWDSCCLAVRGLVRRFVRNRDGEMDNSIQIEFVLKGLSSFGQNTDRTLRRAILGYYRDDLYLVPPSNTTTNP DDYDPNLIP
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=789, Percent_Identity=29.0240811153359, Blast_Score=280, Evalue=4e-76,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 91834; Mature: 91834
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRALRLLPLPLSIAICLPAMAADKPLNWGLCPAVDPLPGFDGAPAADPKAAEMRQQLPT CCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC DIEGDQLSGTSTTPQYQGNVALKRGDQFLGADNLRMDTETGNYIAEGNVRYQDTSFRMVA CCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCEEECCCCCEEECCCEEEECCCEEEEE DRAEGNQDTDTHKVTNIQYQLVERRGNGDAESVDLQGQVGQMHRSTYTTCDPSQPIWRVR ECCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCEEEEE APEIDVDNEEGFGTARNAVLQIGKVPVLYFPWFKFPIDDRRQTGLLFPQFGLSGRNGFDY CCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCEECCCCCCCCCCEEEECCCCCCCCCCCC LQPIYLNLAPNYDATLLPRYMSKRGFMFGTEFRYLYEGGRGEVTGNYLPNDKLRDKDRGS CCEEEEEECCCCCCCHHHHHHHCCCCEEECCEEEEEECCCCCEECCCCCCCCCCCCCCCC VFYSGYHNVNSNWQARSSISWVSDTRYVEDFTSRINGMGSASSLQSTVGIYGTGETWTAG EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCEEEEECCCCEEEC LMADRWQLTDYTLDEQALPYNRQPRAYFTWEKPLGIFEAGIYAEAVRFTHDDSYFVRPPI CEECCEEECCEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHEEEEEEECCCCEEEECCC SGSSRDDNEDEYVRTNIRNKQYGSGARLDVKPYISMPLSGAAWFLTPTVAWRYTAYQLDS CCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCEECCCCCCCEEEEECCEEEEEEEEECCC TLADTAPLTGNRTPTRSLPIASLDAGLYFDRETSLFGTNYLNTLEPRMYYLYVPYRDQDD HHHCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCC LPVFDTRPFTFSYGQLFRDTRYTGADRQNDANQLTLAVTSRWLRQDDGREKLSLSAGQIL CCEECCCCCEEHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCEEEECCCEEE YFSDSLVTINNSNNSAAGSEQTVEQGKSAWVADANYMINDRWSMGATYQWNPNSRKEDLA EEECCEEEEECCCCCCCCCHHHHHHCCCEEEECCCEEEECCCCCCCEEEECCCCCHHHHH SLRTRYLLNNDGIINLAYRYRRNLTDNSDQLKQADFSFLYPINPSWSAVGRYYYSLLDRK HHHHHHEECCCCEEEEEEHHHCCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC PLEIIGGVQWDSCCLAVRGLVRRFVRNRDGEMDNSIQIEFVLKGLSSFGQNTDRTLRRAI CHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHH LGYYRDDLYLVPPSNTTTNPDDYDPNLIP HHHHCCCEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRRALRLLPLPLSIAICLPAMAADKPLNWGLCPAVDPLPGFDGAPAADPKAAEMRQQLPT CCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC DIEGDQLSGTSTTPQYQGNVALKRGDQFLGADNLRMDTETGNYIAEGNVRYQDTSFRMVA CCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCEEECCCCCEEECCCEEEECCCEEEEE DRAEGNQDTDTHKVTNIQYQLVERRGNGDAESVDLQGQVGQMHRSTYTTCDPSQPIWRVR ECCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCEEEEE APEIDVDNEEGFGTARNAVLQIGKVPVLYFPWFKFPIDDRRQTGLLFPQFGLSGRNGFDY CCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCEECCCCCCCCCCEEEECCCCCCCCCCCC LQPIYLNLAPNYDATLLPRYMSKRGFMFGTEFRYLYEGGRGEVTGNYLPNDKLRDKDRGS CCEEEEEECCCCCCCHHHHHHHCCCCEEECCEEEEEECCCCCEECCCCCCCCCCCCCCCC VFYSGYHNVNSNWQARSSISWVSDTRYVEDFTSRINGMGSASSLQSTVGIYGTGETWTAG EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCEEEEECCCCEEEC LMADRWQLTDYTLDEQALPYNRQPRAYFTWEKPLGIFEAGIYAEAVRFTHDDSYFVRPPI CEECCEEECCEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHEEEEEEECCCCEEEECCC SGSSRDDNEDEYVRTNIRNKQYGSGARLDVKPYISMPLSGAAWFLTPTVAWRYTAYQLDS CCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCEECCCCCCCEEEEECCEEEEEEEEECCC TLADTAPLTGNRTPTRSLPIASLDAGLYFDRETSLFGTNYLNTLEPRMYYLYVPYRDQDD HHHCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCC LPVFDTRPFTFSYGQLFRDTRYTGADRQNDANQLTLAVTSRWLRQDDGREKLSLSAGQIL CCEECCCCCEEHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCEEEECCCEEE YFSDSLVTINNSNNSAAGSEQTVEQGKSAWVADANYMINDRWSMGATYQWNPNSRKEDLA EEECCEEEEECCCCCCCCCHHHHHHCCCEEEECCCEEEECCCCCCCEEEECCCCCHHHHH SLRTRYLLNNDGIINLAYRYRRNLTDNSDQLKQADFSFLYPINPSWSAVGRYYYSLLDRK HHHHHHEECCCCEEEEEEHHHCCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC PLEIIGGVQWDSCCLAVRGLVRRFVRNRDGEMDNSIQIEFVLKGLSSFGQNTDRTLRRAI CHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHH LGYYRDDLYLVPPSNTTTNPDDYDPNLIP HHHHCCCEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]