Click here to switch to the map view.

The map label for this gene is yrdA [H]

Identifier: 78045916

GI number: 78045916

Start: 412264

End: 412809

Strand: Reverse

Name: yrdA [H]

Synonym: XCV0360

Alternate gene names: 78045916

Gene position: 412809-412264 (Counterclockwise)

Preceding gene: 78045917

Following gene: 78045913

Centisome position: 7.97

GC content: 64.65

Gene sequence:

>546_bases
GTGACCCCGATTCGCTCCTTTTTGCACCACACCCCGCAACTGGGCGCCCGCGTTTACGTGGATTCTGCCTGCACCATCAT
CGGCGAGGTGAGCCTGGGCGATGACGTCTCGGTCTGGCCGGGCACCGTGATCCGCGGCGACGTCAATCATGTGCAGATCG
GCGCGCGTACCAACGTGCAGGACGGCACCATCATCCACGTCAGTCACCACAGCCCGTTCAACAAGGCCGGCTACCCCACC
GTGATCGGCGAGGACGTCACCGTGGGCCACGGCACCATCCTGCATGCCTGCACCATCGAAGACCTGTGCCTGATCGGCAT
GGGCGCCTGCGTGCTGGATGGCGCAACGGTCAAACGGTATGGCTTTGTGGGTGCCGGCGCAGTGGTGGGCCCGGGCAAGG
TGGTGGGCGAAGCCGAGTTGTGGCTGGGCAATCCTGCACGCCTGGCGCGCACGCTCAGCGACAAGGAAATCGAAAGCCTG
CATTACTCCGCGCAACATTACGTGCGGCTCAAGGATCAGTACCTGGGCGCCTCACCCGCCGGCTGA

Upstream 100 bases:

>100_bases
GGTGACTGCAGCCCGGTGCGCTGCCGCAGCGGCAACCGCAGCGCAGGTATCATCCGCGGCGTGTCCGCAGTGGGCGGCAC
GCTGACCTGACGGAGATGCC

Downstream 100 bases:

>100_bases
GCCGCAGCACCGGCGCACCTGTCTGGCGCGGGCGCGACGGTACCAGGCGCGCGCGGCTACGGCTGCGTGGCGTGCTCCAG
TGCCGTCAACATGGCCAGCG

Product: putative transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTPIRSFLHHTPQLGARVYVDSACTIIGEVSLGDDVSVWPGTVIRGDVNHVQIGARTNVQDGTIIHVSHHSPFNKAGYPT
VIGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVKRYGFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESL
HYSAQHYVRLKDQYLGASPAG

Sequences:

>Translated_181_residues
MTPIRSFLHHTPQLGARVYVDSACTIIGEVSLGDDVSVWPGTVIRGDVNHVQIGARTNVQDGTIIHVSHHSPFNKAGYPT
VIGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVKRYGFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESL
HYSAQHYVRLKDQYLGASPAG
>Mature_180_residues
TPIRSFLHHTPQLGARVYVDSACTIIGEVSLGDDVSVWPGTVIRGDVNHVQIGARTNVQDGTIIHVSHHSPFNKAGYPTV
IGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVKRYGFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESLH
YSAQHYVRLKDQYLGASPAG

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=172, Percent_Identity=50.5813953488372, Blast_Score=183, Evalue=6e-48,
Organism=Escherichia coli, GI1787667, Length=158, Percent_Identity=34.8101265822785, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI87081681, Length=155, Percent_Identity=32.9032258064516, Blast_Score=84, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19163; Mature: 19032

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPIRSFLHHTPQLGARVYVDSACTIIGEVSLGDDVSVWPGTVIRGDVNHVQIGARTNVQ
CCHHHHHHHCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCCC
DGTIIHVSHHSPFNKAGYPTVIGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVKRY
CCEEEEEECCCCCCCCCCCEEECCCEEECCCEEEEEECHHHHHHHCCCHHHCCCCEEEEC
GFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESLHYSAQHYVRLKDQYLGASPA
CCEECCCEECCCCEECCEEEEECCHHHHHHHHCHHHHHHHHHCCHHEEEEEHHHCCCCCC
G
C
>Mature Secondary Structure 
TPIRSFLHHTPQLGARVYVDSACTIIGEVSLGDDVSVWPGTVIRGDVNHVQIGARTNVQ
CHHHHHHHCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCCC
DGTIIHVSHHSPFNKAGYPTVIGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVKRY
CCEEEEEECCCCCCCCCCCEEECCCEEECCCEEEEEECHHHHHHHCCCHHHCCCCEEEEC
GFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESLHYSAQHYVRLKDQYLGASPA
CCEECCCEECCCCEECCEEEEECCHHHHHHHHCHHHHHHHHHCCHHEEEEEHHHCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]