BacMap

Definition	Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome.
Accession	NC_007508
Length	5,178,466

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The map label for this gene is ylmA [H]

Identifier: 78045719

GI number: 78045719

Start: 195617

End: 196462

Strand: Reverse

Name: ylmA [H]

Synonym: XCV0163

Alternate gene names: 78045719

Gene position: 196462-195617 (Counterclockwise)

Preceding gene: 78045724

Following gene: 78045718

Centisome position: 3.79

GC content: 66.19

Gene sequence:

>846_bases
ATGACTGTTGCCACCGAACATGCTGCCGATTCCACTGTCGTTACTAACGCCGCCCAGCTGATCGAACTCGACCAGGCCAG
CGTGATGCGCGGCCAGGTCCGGGTCCTGCATGCGCTGAGCCTGCGCATCGCGCTGGGGCAGCACACCGCGATCCTGGGGC
CCAATGGCTGCGGCAAATCGTCCTTCATCAAATTGATCACGCGCGAGTTGTACCCGCTGGCGCGCGCCGACGGTCTGCCC
GCAGTGAAGGTGATGGGACAAACGCGCTGGCAGGTGGATCGCCTGCGCTCGCAATTGGGCATCGTCACCAGCGATCTGAG
CGTCAATCTGGCCGACATGCCCGGGCTGGATGTGGAAAGCGCGGTGCTCTCCGGATTCTTCGCCAGCTACGTGGTGCCGC
CGCATCGCGAGATCAGCGACGACATGCGTGCACGCGCGCGCGAAGCGCTGGCGCTGGCGCGCGCATTGCCGTTGGTGGAC
CGGCAATTTGCGCAATTGTCGGCCGGCGAAACGCGCCGTGTGCTGATTGCGCGTGCGCTGGTCAATCGCCCGCAGGCGTT
GCTGCTGGACGAGCCGTCCACCGGGCTGGATCTGGTGGCACGCCAGCACCTGCTCGAGACGATGCGGCACCTCGCCCGGC
AAGGCATCACGCTGGTGCTGGTGACCCATCACATCGAAGAAATCGTGCCGGAGATCGAACGGGTGATCCTGCTGCGCGCC
GGCAAGGTGGTGGCCGACGGCACGCGTGAGGCGCTGCTCACCGATGCCAGCCTGTCGGCCGTGTTCGATGGCCCGGTGCG
GGTGCAGCGCAATGGCGCGCGCTGTTGGGCAACGGTGGGCGAGTAA

Upstream 100 bases:

>100_bases
GCGATCGCGGCAAACTTCACCCTTCGGATGCGTAGGGTTGCACCTACATTTCTAAAGCGGTTCAGACCCCCCTTCCCCAC
TTCCGTCTGCTGTCACCCGT

Downstream 100 bases:

>100_bases
GGGCCACCCACCCGCAGCTCGCGCAGGCCGTGTCCTTGCACGAGCTGCCGGCGATGCTCCGCATTGCGATGGCGAAGCGC
TCCGGACGGGCGCACAACCG

Product: ABC transporter ATP-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MTVATEHAADSTVVTNAAQLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKSSFIKLITRELYPLARADGLP
AVKVMGQTRWQVDRLRSQLGIVTSDLSVNLADMPGLDVESAVLSGFFASYVVPPHREISDDMRARAREALALARALPLVD
RQFAQLSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRA
GKVVADGTREALLTDASLSAVFDGPVRVQRNGARCWATVGE

Sequences:

>Translated_281_residues
MTVATEHAADSTVVTNAAQLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKSSFIKLITRELYPLARADGLP
AVKVMGQTRWQVDRLRSQLGIVTSDLSVNLADMPGLDVESAVLSGFFASYVVPPHREISDDMRARAREALALARALPLVD
RQFAQLSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRA
GKVVADGTREALLTDASLSAVFDGPVRVQRNGARCWATVGE
>Mature_280_residues
TVATEHAADSTVVTNAAQLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKSSFIKLITRELYPLARADGLPA
VKVMGQTRWQVDRLRSQLGIVTSDLSVNLADMPGLDVESAVLSGFFASYVVPPHREISDDMRARAREALALARALPLVDR
QFAQLSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRAG
KVVADGTREALLTDASLSAVFDGPVRVQRNGARCWATVGE

Specific function: Part Of The Binding-Protein-Dependent Transport System For Spermidine/Putrescine. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1119

COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4505771, Length=241, Percent_Identity=30.2904564315353, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI9961252, Length=241, Percent_Identity=30.2904564315353, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI9961250, Length=248, Percent_Identity=29.4354838709677, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI42741659, Length=239, Percent_Identity=30.1255230125523, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI255708477, Length=240, Percent_Identity=31.6666666666667, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI148612844, Length=238, Percent_Identity=31.9327731092437, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI9955968, Length=240, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI9955966, Length=240, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI45243524, Length=240, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI27881501, Length=221, Percent_Identity=24.8868778280543, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI30795238, Length=221, Percent_Identity=24.8868778280543, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=28.8888888888889, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI42490749, Length=241, Percent_Identity=26.5560165975104, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI21536378, Length=234, Percent_Identity=29.9145299145299, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI171184400, Length=238, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI31657092, Length=215, Percent_Identity=26.5116279069767, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI150417984, Length=218, Percent_Identity=29.8165137614679, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787370, Length=229, Percent_Identity=29.2576419213974, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=30.672268907563, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=31.5555555555556, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=30.1310043668122, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786872, Length=256, Percent_Identity=30.859375, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786803, Length=258, Percent_Identity=28.6821705426357, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786975, Length=241, Percent_Identity=30.2904564315353, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=30.6382978723404, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790739, Length=247, Percent_Identity=28.7449392712551, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786319, Length=235, Percent_Identity=29.3617021276596, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87081709, Length=249, Percent_Identity=25.3012048192771, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87081791, Length=233, Percent_Identity=31.7596566523605, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1789672, Length=232, Percent_Identity=28.0172413793103, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87082268, Length=251, Percent_Identity=27.8884462151394, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790544, Length=266, Percent_Identity=27.8195488721804, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788761, Length=232, Percent_Identity=31.4655172413793, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788165, Length=247, Percent_Identity=29.9595141700405, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994943, Length=261, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786345, Length=235, Percent_Identity=26.3829787234043, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788450, Length=252, Percent_Identity=29.7619047619048, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=26.4462809917355, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789593, Length=252, Percent_Identity=27.3809523809524, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786253, Length=243, Percent_Identity=30.4526748971193, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=30.0469483568075, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789864, Length=227, Percent_Identity=25.5506607929515, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786398, Length=238, Percent_Identity=24.3697478991597, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081782, Length=238, Percent_Identity=24.3697478991597, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=30.6666666666667, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787164, Length=220, Percent_Identity=30.4545454545455, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1790190, Length=94, Percent_Identity=30.8510638297872, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=26.5822784810127, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=29.6803652968037, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789586, Length=276, Percent_Identity=26.4492753623188, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787500, Length=225, Percent_Identity=24.8888888888889, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789891, Length=231, Percent_Identity=25.5411255411255, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788002, Length=248, Percent_Identity=27.8225806451613, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787758, Length=227, Percent_Identity=27.3127753303965, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789963, Length=247, Percent_Identity=25.5060728744939, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=25.5411255411255, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788644, Length=91, Percent_Identity=39.5604395604396, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=237, Percent_Identity=29.1139240506329, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193202349, Length=236, Percent_Identity=27.5423728813559, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI193211015, Length=229, Percent_Identity=27.5109170305677, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI193211017, Length=229, Percent_Identity=27.5109170305677, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71996809, Length=229, Percent_Identity=27.0742358078603, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193209708, Length=236, Percent_Identity=28.8135593220339, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI212646699, Length=246, Percent_Identity=27.6422764227642, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17569143, Length=231, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=245, Percent_Identity=27.7551020408163, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17569145, Length=251, Percent_Identity=27.8884462151394, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=224, Percent_Identity=26.3392857142857, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=231, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322640, Length=232, Percent_Identity=28.8793103448276, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281363262, Length=231, Percent_Identity=32.034632034632, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24653245, Length=231, Percent_Identity=32.034632034632, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI85726357, Length=236, Percent_Identity=30.0847457627119, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17136662, Length=232, Percent_Identity=27.1551724137931, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24659289, Length=243, Percent_Identity=26.7489711934156, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28574533, Length=235, Percent_Identity=26.3829787234043, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24650853, Length=252, Percent_Identity=25.3968253968254, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161076682, Length=233, Percent_Identity=27.4678111587983, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24650855, Length=252, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281362751, Length=252, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161076684, Length=233, Percent_Identity=27.4678111587983, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581617, Length=233, Percent_Identity=27.4678111587983, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581615, Length=233, Percent_Identity=27.4678111587983, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85725262, Length=278, Percent_Identity=25.1798561151079, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581191, Length=218, Percent_Identity=27.9816513761468, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581189, Length=218, Percent_Identity=27.9816513761468, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581193, Length=218, Percent_Identity=27.9816513761468, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581195, Length=218, Percent_Identity=27.9816513761468, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28574744, Length=225, Percent_Identity=26.2222222222222, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28571871, Length=254, Percent_Identity=27.1653543307087, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30526; Mature: 30395

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVATEHAADSTVVTNAAQLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCHH
SFIKLITRELYPLARADGLPAVKVMGQTRWQVDRLRSQLGIVTSDLSVNLADMPGLDVES
HHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCEEECCCEEEECCCCCCCHHH
AVLSGFFASYVVPPHREISDDMRARAREALALARALPLVDRQFAQLSAGETRRVLIARAL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRA
HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHC
GKVVADGTREALLTDASLSAVFDGPVRVQRNGARCWATVGE
CCEEECCCHHHHHCCCHHHHEECCCEEEEECCCEEEEECCC
>Mature Secondary Structure 
TVATEHAADSTVVTNAAQLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCHH
SFIKLITRELYPLARADGLPAVKVMGQTRWQVDRLRSQLGIVTSDLSVNLADMPGLDVES
HHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCEEECCCEEEECCCCCCCHHH
AVLSGFFASYVVPPHREISDDMRARAREALALARALPLVDRQFAQLSAGETRRVLIARAL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRA
HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHC
GKVVADGTREALLTDASLSAVFDGPVRVQRNGARCWATVGE
CCEEECCCHHHHHCCCHHHHEECCCEEEEECCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]