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The map label for this gene is cirA [C]

Identifier: 78045606

GI number: 78045606

Start: 58221

End: 60878

Strand: Reverse

Name: cirA [C]

Synonym: XCV0050

Alternate gene names: 78045606

Gene position: 60878-58221 (Counterclockwise)

Preceding gene: 78045610

Following gene: 78045605

Centisome position: 1.18

GC content: 67.72

Gene sequence:

>2658_bases
ATGCGCCTGTTGCATTCCCCGTCCCGCCCCCATTGCGCTGCCCCGTCTTGCCCACCGCCTCCGCATGCGCTGTCGCTTGC
GCTGGGGCTGGCCTTGATCGGCTGGCTTCCCTCGCACGCCACCGCCGCCGACATGTCCGGCGGAGGCGACGCGCTGACCA
TGGACGCGGTGCAGGTGCGCAACCCGTTCCAGTCGCAGAACACGCGCGCCATCGCCACCAAGCAGGCGGCGCCCACCATC
GTCGATTCGGTCGCCGCCGACAGCATCGGGCAACTGCCGGACTTCAATGTGGGCGATGCGCTGCGCCGGGTCACCGGCGT
GAGCACGGTCGAGTACCAGGGCGAACCACGCTATGTGACGGTGCGCGGCCTCAACGGCAACTACAACAGCATGCTGATCG
ACGGCTTTGCCTTCGCCAGCAACGACATCGGTAGCCGCCAGGCGCTGATGGATGTGCTACCGGCCAACTTCGTGGACCGC
ATCGATGTGGTGAAGTCGCTGCTGCCGGAGAACGATGGCGGCGCGATCGGTGGTGTCACCAATCTGGTCACCGCCACCGG
CTTTGCCCGGCCCGATGGCCTGCTGACCGCCTCGGCCAAGGGCGGCGCCAACCTCGTGGGAAGCCGCTATGGCGGCCGCA
CGCCGGTGGGCGAAGGCGAGCTGAAATGGGGCAAGCGCTTCGGGCGTGACGGCCAGTTCGCGTTTTTGGGGGCGGCCAGC
GTCTGGCGCCGTGAGATTTCGGTGCCGCAGCAGGAAAATGGCGGCGCCCTCAATTGGTACAACGCCGACGGCACGCGCGC
GTCGTCGGCCTATGGCGGCACCGGCGCGGCGGTGCCCAGCGAACGGCGCTGGTACAACTACGACAACACCCGCGAACGGC
GCGGCGTGACCGCACGCGTGGATTGGCAGCCGGATGGTCCGCTCAGCGGCCATGTGTCCGGCTACACGTTCGACCAGCAC
GAATCTTCCGACCGCAATGCCCAGGTCGCCCAGGTGCAGAACAGCGCGCGCCTGACCCGCAGCGGCCCGCAAAGCGGCAC
GCTGGACAATCTCAACCAGCTCGTCGAGTTGGGGCAGCTGCGCTGGAAGCGCGGGCTGTCCGGCATCAACGGCGAACTGC
TGGCCGAGCTGCCTGACCAGTGGCGCGGCGCGCTGCGCGCTAGCACCTCGCGCGCCACGGTGGACAACCCGCAGACCTGG
GACCGGTTCCAGCAGAATGGCCTGGCTTACGGCTTCGATTGGAATGGCACCCTGCCGGCATTCACGGCCCTGGACCCGGC
CCTGGCCGAGGACCCGACCCGTTACGCCAACCTCAACCACCAGCAGGAGCGCACGACCTACGCCGAACGGGTGAGCGACC
TGCAACTGGAACTCCGTCGCAACATGGACGAAGACAGCCAGGGGCTGGGACTGGCCTTTGGCCTGCGACAGGTGCGCACG
CACATGCAGACCGCGTTCCAGCGCACGACCTGGAGCGGGTTGCCTTATTCGCTGGCCGATGTGCTGGGCAACGCCACCTG
CGCCCTGGGTTGCAATGCGCCCATGTTGATCATCGACCCGGACCTGGCCGACGCGCGCTGGGATGCGGTGTCCGGCCAGG
CGCGCGGCGTGGCGGACATCACCGCGCAGAACAGCGGCACCTACAGCGTGGATGAGCAGGTGCGCGCCGGCTTCGCACAA
GCACAGTGGCGCGGCGAGCGCTGGCGGTTGGCCGGCGGCGTGCGCCTGGAGCAGACCCGCTTCGGCAGCAGCGGCCAGCA
ATTGAGCGGCACCGTCTGGGCGCCTGTCAGTGCGCAACGCACCTACCGCAACTGGTTGCCATCGCTGGCCGGCCAGTTGC
AGACCAGTGCCAACGGCACGCTACGCTTCGGCGCCTCGCGCTCGATCGGGCGACCGCGCCTGGACCAGATGGCGTTGAAC
GGCGGCGTGCTCACGCTGGGCAGCAACCCGCCCACGCTCAACCAGGGCAACCCGGACCTGCAGCCGCGTCGCTCGCAGAA
TCTGGACCTTGGCCACGACTGGACGTTCGACGACGGTGGCAGCCTGCTGTCGATCGCGCTGTTCCACAAGACCATCGACA
ACGAGATTTTCCGTTACGGCCAGCTGCAGAGCATCGACGGCGAGCAGGTGCTGGTCACCCAACCGCGCAATACCGACCGG
CCGGTCCGCATGCGCGGCGCCGAACTCGGCGCGATCAAGGAACTGGGCCCGTGGCTGCCCGCGCTGGCCGGGCTGTCGGT
CGGTGCCAATGTCACCTTCCTGGACGTGGACTACCCGGTGGTGCTCGGCGATGGCAGCCGCACCACCTTGTCGGTGCTGC
CGCAGCAGCCCAAGCAGCTGTGGAATCTGACCCTGAACTACGCCCGTGGGCCGCTGCGCAGCACCCTGGCCTGGAGCCGT
ACCGGCGAGCTGTGGGACGACCGCTACCCCAACTACAGCAACCAGCAGGAGTTTTATCGCAACCGCTACCAACAGCCGCT
GGACCGTCTCGACCTGAAACTGGCCTGGGATGTCTCGCCGGCAGTGGCAGTGAGCCTGGATGTGCTCAACCTGACCGGCC
AGGGCTACGAATACCGCATCGGCCGCCACCAGGAATACGTGCAATCGGCCTGGAAAATGGCACCCACCGTGATGCTCGGC
GTCAACGTCAAACTCTGA

Upstream 100 bases:

>100_bases
AGGGCGAAACGTTCGTCGTTGTCATAATTGCTTTAATTAAGCAGCTTAATTTAATCCGTCCGCGGCCCTGCGTTGGGGCC
ACCGACGTTGATATCGTGCC

Downstream 100 bases:

>100_bases
GGGTTTTCCCATGTCGTCGTTTCTGGACACACGCATCAGCCGCCGTCGCCTGATGGCTGCCGCCGGCACCTCGCTGCTGG
CCACCAGTCTCGCCACACCG

Product: TonB-dependent outer membrane receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Subfamily; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Plug; Outer Membrane Protein; NB-Dependent Outer Membrane Receptor Protein; Outer Membrane Insertion C-Terminal Signal; NB-Dependent Receptor Subfamily Protein; NB Dependent Receptor Protein; Crossover Junction Endodeoxyribonuclease RuvC; NB Dependent Receptor; NB-Dependent Outer Membrane Fe Receptor Protein; NB Dependent Receptor For Iron Chelates; Outer Membrane Receptor Protein; NB-Dependent Outer Membrane Ferripyoverdine Receptor; 3-Dehydroquinate Synthase; Ferrienterochelin/Colicin Outer Membrane Receptor; Exported nB-Dependent Receptor; Peptidase; Outer Membrane Receptor Family Protein; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 885; Mature: 885

Protein sequence:

>885_residues
MRLLHSPSRPHCAAPSCPPPPHALSLALGLALIGWLPSHATAADMSGGGDALTMDAVQVRNPFQSQNTRAIATKQAAPTI
VDSVAADSIGQLPDFNVGDALRRVTGVSTVEYQGEPRYVTVRGLNGNYNSMLIDGFAFASNDIGSRQALMDVLPANFVDR
IDVVKSLLPENDGGAIGGVTNLVTATGFARPDGLLTASAKGGANLVGSRYGGRTPVGEGELKWGKRFGRDGQFAFLGAAS
VWRREISVPQQENGGALNWYNADGTRASSAYGGTGAAVPSERRWYNYDNTRERRGVTARVDWQPDGPLSGHVSGYTFDQH
ESSDRNAQVAQVQNSARLTRSGPQSGTLDNLNQLVELGQLRWKRGLSGINGELLAELPDQWRGALRASTSRATVDNPQTW
DRFQQNGLAYGFDWNGTLPAFTALDPALAEDPTRYANLNHQQERTTYAERVSDLQLELRRNMDEDSQGLGLAFGLRQVRT
HMQTAFQRTTWSGLPYSLADVLGNATCALGCNAPMLIIDPDLADARWDAVSGQARGVADITAQNSGTYSVDEQVRAGFAQ
AQWRGERWRLAGGVRLEQTRFGSSGQQLSGTVWAPVSAQRTYRNWLPSLAGQLQTSANGTLRFGASRSIGRPRLDQMALN
GGVLTLGSNPPTLNQGNPDLQPRRSQNLDLGHDWTFDDGGSLLSIALFHKTIDNEIFRYGQLQSIDGEQVLVTQPRNTDR
PVRMRGAELGAIKELGPWLPALAGLSVGANVTFLDVDYPVVLGDGSRTTLSVLPQQPKQLWNLTLNYARGPLRSTLAWSR
TGELWDDRYPNYSNQQEFYRNRYQQPLDRLDLKLAWDVSPAVAVSLDVLNLTGQGYEYRIGRHQEYVQSAWKMAPTVMLG
VNVKL

Sequences:

>Translated_885_residues
MRLLHSPSRPHCAAPSCPPPPHALSLALGLALIGWLPSHATAADMSGGGDALTMDAVQVRNPFQSQNTRAIATKQAAPTI
VDSVAADSIGQLPDFNVGDALRRVTGVSTVEYQGEPRYVTVRGLNGNYNSMLIDGFAFASNDIGSRQALMDVLPANFVDR
IDVVKSLLPENDGGAIGGVTNLVTATGFARPDGLLTASAKGGANLVGSRYGGRTPVGEGELKWGKRFGRDGQFAFLGAAS
VWRREISVPQQENGGALNWYNADGTRASSAYGGTGAAVPSERRWYNYDNTRERRGVTARVDWQPDGPLSGHVSGYTFDQH
ESSDRNAQVAQVQNSARLTRSGPQSGTLDNLNQLVELGQLRWKRGLSGINGELLAELPDQWRGALRASTSRATVDNPQTW
DRFQQNGLAYGFDWNGTLPAFTALDPALAEDPTRYANLNHQQERTTYAERVSDLQLELRRNMDEDSQGLGLAFGLRQVRT
HMQTAFQRTTWSGLPYSLADVLGNATCALGCNAPMLIIDPDLADARWDAVSGQARGVADITAQNSGTYSVDEQVRAGFAQ
AQWRGERWRLAGGVRLEQTRFGSSGQQLSGTVWAPVSAQRTYRNWLPSLAGQLQTSANGTLRFGASRSIGRPRLDQMALN
GGVLTLGSNPPTLNQGNPDLQPRRSQNLDLGHDWTFDDGGSLLSIALFHKTIDNEIFRYGQLQSIDGEQVLVTQPRNTDR
PVRMRGAELGAIKELGPWLPALAGLSVGANVTFLDVDYPVVLGDGSRTTLSVLPQQPKQLWNLTLNYARGPLRSTLAWSR
TGELWDDRYPNYSNQQEFYRNRYQQPLDRLDLKLAWDVSPAVAVSLDVLNLTGQGYEYRIGRHQEYVQSAWKMAPTVMLG
VNVKL
>Mature_885_residues
MRLLHSPSRPHCAAPSCPPPPHALSLALGLALIGWLPSHATAADMSGGGDALTMDAVQVRNPFQSQNTRAIATKQAAPTI
VDSVAADSIGQLPDFNVGDALRRVTGVSTVEYQGEPRYVTVRGLNGNYNSMLIDGFAFASNDIGSRQALMDVLPANFVDR
IDVVKSLLPENDGGAIGGVTNLVTATGFARPDGLLTASAKGGANLVGSRYGGRTPVGEGELKWGKRFGRDGQFAFLGAAS
VWRREISVPQQENGGALNWYNADGTRASSAYGGTGAAVPSERRWYNYDNTRERRGVTARVDWQPDGPLSGHVSGYTFDQH
ESSDRNAQVAQVQNSARLTRSGPQSGTLDNLNQLVELGQLRWKRGLSGINGELLAELPDQWRGALRASTSRATVDNPQTW
DRFQQNGLAYGFDWNGTLPAFTALDPALAEDPTRYANLNHQQERTTYAERVSDLQLELRRNMDEDSQGLGLAFGLRQVRT
HMQTAFQRTTWSGLPYSLADVLGNATCALGCNAPMLIIDPDLADARWDAVSGQARGVADITAQNSGTYSVDEQVRAGFAQ
AQWRGERWRLAGGVRLEQTRFGSSGQQLSGTVWAPVSAQRTYRNWLPSLAGQLQTSANGTLRFGASRSIGRPRLDQMALN
GGVLTLGSNPPTLNQGNPDLQPRRSQNLDLGHDWTFDDGGSLLSIALFHKTIDNEIFRYGQLQSIDGEQVLVTQPRNTDR
PVRMRGAELGAIKELGPWLPALAGLSVGANVTFLDVDYPVVLGDGSRTTLSVLPQQPKQLWNLTLNYARGPLRSTLAWSR
TGELWDDRYPNYSNQQEFYRNRYQQPLDRLDLKLAWDVSPAVAVSLDVLNLTGQGYEYRIGRHQEYVQSAWKMAPTVMLG
VNVKL

Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 96528; Mature: 96528

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLHSPSRPHCAAPSCPPPPHALSLALGLALIGWLPSHATAADMSGGGDALTMDAVQVR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHC
NPFQSQNTRAIATKQAAPTIVDSVAADSIGQLPDFNVGDALRRVTGVSTVEYQGEPRYVT
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCCEEE
VRGLNGNYNSMLIDGFAFASNDIGSRQALMDVLPANFVDRIDVVKSLLPENDGGAIGGVT
EEECCCCCCCEEEECEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCHH
NLVTATGFARPDGLLTASAKGGANLVGSRYGGRTPVGEGELKWGKRFGRDGQFAFLGAAS
HHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECHHH
VWRREISVPQQENGGALNWYNADGTRASSAYGGTGAAVPSERRWYNYDNTRERRGVTARV
HHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEE
DWQPDGPLSGHVSGYTFDQHESSDRNAQVAQVQNSARLTRSGPQSGTLDNLNQLVELGQL
ECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
RWKRGLSGINGELLAELPDQWRGALRASTSRATVDNPQTWDRFQQNGLAYGFDWNGTLPA
HHHHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCH
FTALDPALAEDPTRYANLNHQQERTTYAERVSDLQLELRRNMDEDSQGLGLAFGLRQVRT
HHHCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
HMQTAFQRTTWSGLPYSLADVLGNATCALGCNAPMLIIDPDLADARWDAVSGQARGVADI
HHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEE
TAQNSGTYSVDEQVRAGFAQAQWRGERWRLAGGVRLEQTRFGSSGQQLSGTVWAPVSAQR
EECCCCCCCHHHHHHHCHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCEEECCCCHHH
TYRNWLPSLAGQLQTSANGTLRFGASRSIGRPRLDQMALNGGVLTLGSNPPTLNQGNPDL
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCC
QPRRSQNLDLGHDWTFDDGGSLLSIALFHKTIDNEIFRYGQLQSIDGEQVLVTQPRNTDR
CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
PVRMRGAELGAIKELGPWLPALAGLSVGANVTFLDVDYPVVLGDGSRTTLSVLPQQPKQL
CEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCEEEECCCCHHHH
WNLTLNYARGPLRSTLAWSRTGELWDDRYPNYSNQQEFYRNRYQQPLDRLDLKLAWDVSP
HHHHHHHCCCCHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHCCHHHCCEEEEECCCC
AVAVSLDVLNLTGQGYEYRIGRHQEYVQSAWKMAPTVMLGVNVKL
CEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHCCEEEEEEEEEC
>Mature Secondary Structure
MRLLHSPSRPHCAAPSCPPPPHALSLALGLALIGWLPSHATAADMSGGGDALTMDAVQVR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHC
NPFQSQNTRAIATKQAAPTIVDSVAADSIGQLPDFNVGDALRRVTGVSTVEYQGEPRYVT
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCCEEE
VRGLNGNYNSMLIDGFAFASNDIGSRQALMDVLPANFVDRIDVVKSLLPENDGGAIGGVT
EEECCCCCCCEEEECEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCHH
NLVTATGFARPDGLLTASAKGGANLVGSRYGGRTPVGEGELKWGKRFGRDGQFAFLGAAS
HHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECHHH
VWRREISVPQQENGGALNWYNADGTRASSAYGGTGAAVPSERRWYNYDNTRERRGVTARV
HHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEE
DWQPDGPLSGHVSGYTFDQHESSDRNAQVAQVQNSARLTRSGPQSGTLDNLNQLVELGQL
ECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
RWKRGLSGINGELLAELPDQWRGALRASTSRATVDNPQTWDRFQQNGLAYGFDWNGTLPA
HHHHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCH
FTALDPALAEDPTRYANLNHQQERTTYAERVSDLQLELRRNMDEDSQGLGLAFGLRQVRT
HHHCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
HMQTAFQRTTWSGLPYSLADVLGNATCALGCNAPMLIIDPDLADARWDAVSGQARGVADI
HHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEE
TAQNSGTYSVDEQVRAGFAQAQWRGERWRLAGGVRLEQTRFGSSGQQLSGTVWAPVSAQR
EECCCCCCCHHHHHHHCHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCEEECCCCHHH
TYRNWLPSLAGQLQTSANGTLRFGASRSIGRPRLDQMALNGGVLTLGSNPPTLNQGNPDL
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCC
QPRRSQNLDLGHDWTFDDGGSLLSIALFHKTIDNEIFRYGQLQSIDGEQVLVTQPRNTDR
CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
PVRMRGAELGAIKELGPWLPALAGLSVGANVTFLDVDYPVVLGDGSRTTLSVLPQQPKQL
CEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCEEEECCCCHHHH
WNLTLNYARGPLRSTLAWSRTGELWDDRYPNYSNQQEFYRNRYQQPLDRLDLKLAWDVSP
HHHHHHHCCCCHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHCCHHHCCEEEEECCCC
AVAVSLDVLNLTGQGYEYRIGRHQEYVQSAWKMAPTVMLGVNVKL
CEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA