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The map label for this gene is yprB [H]

Identifier: 78045610

GI number: 78045610

Start: 64955

End: 66418

Strand: Reverse

Name: yprB [H]

Synonym: XCV0054

Alternate gene names: 78045610

Gene position: 66418-64955 (Counterclockwise)

Preceding gene: 78045611

Following gene: 78045606

Centisome position: 1.28

GC content: 68.85

Gene sequence:

>1464_bases
ATGAATGTGAGTGCGGACCGGCTGCGTTTGTTGCGGCGTCAGGCCGGGCAGGCTGATGTGCCTGCGCCGGCGAAGGCTGA
CGATGGCGATGGCGATGCGCTGCACGATGCGCCGGCGGTCGATGCGCAGGCTGCGGATGCCGCGCCTGTCGATGAGGCCG
CGCAGCCAGCTTCCGGCGTCCACACGCAGGGCACGACGCCTGCGCCTGGTCATGCCCCGGGCGTTAGCGCCGAACGTCTG
CGCCTGCTGCGCCGTCAGGTTGGCGGCCTGACGCCGGCAGCGCGCAAGGACGATGCGATCATGCCGACACGTGCACAGCG
GGCAGCGGTCTCCGGCGCCGCGTTACCCACTGCGGGCTTGCCGCTGCGAGAGAACGCCGCTGCACGTCATGGCGCCGTGG
CCGCTCGCCCCAACGAGGCGCGCGACGCATCAACACGCACGCGCCGCGCCTTGCAGGCGCCCATGCCTGCACCGCCTGCG
CGCGAGGCATCGGTCTTTGCGTGGGTGGAGCACGATGTGCGCCACAAGCCGGCGCTGCCTTCGAATGTCGATGTCGATGC
AATCATCGCCGTGGAGGCGGATAGCGCGCGCCCTTGGCCCACAGCGCGCAGCACAGCGACAACATCGCCCGCATCGATGT
CGCCGCCACCACCGGTACAGCGCCGCACCGATATCGCCGGCCTGCGCAAGATGATCGGCCTGCGCGAACGCGCGGTTTCG
GCGCATGCACCCATCCGCGCGCCATCCACCGACCGATCTCTGCCTGGCAACGAGATCGCGCCCGGCCTGCATCTGATCCA
GGCGTTCCTGCCACAGGCGATTCCCACCGAGGCGCTCTCGCTGGCCTTCGCCAAACGCGATGATGCCGTCGACCCGATGG
ACCTGCTGTTCTTCGATACCGAAACCACCGGCCTGGCCGGCGGTACCGGCACCCGCGCCTTCATGATCGGCGTGGCCGAT
TGGGTGGTCGATGCCGTGCAGGGCAACGGCCTGCGCGTGCGTCAATTGATGATGTCCACGATGGCGGCCGAAAGCGCGAT
GCTGGATCTGTTCCGCACCTGGCTGACGCCGCGCACCGTCCTGTCCAGCTACAACGGCCGCTGCTACGACGCCCCGCTGC
TGAAGACGCGCTACCGCCTGGCACGTCGCGGCGACCCGATTTCTGCACTGGACCATGTGGATCTGCTGTTCCCCACGCGC
CGGCGCTATCGCGGCACCTGGGAGAACTGCAAGCTGTCCACCATCGAACGGCAACTGCTGCGCGTGGTGCGCGAAGACGA
CCTGCCCGGCTCCGAGGCCCCGGCCGCCTGGTTGAGTTACCTGCGCGGCGGCAGCGCGCGCAACCTGCGCCGCGTGGCCG
AACACAACCACCAGGATGTGGTGACGCTGTCGCTACTGATGCAACGGCTGGTGGCAGTGGACGCGCAGGAGCGCAATGCG
CTGACGTTGGCGCGCACGCCTTGA

Upstream 100 bases:

>100_bases
AGTCGCTGGCGCTGACGGTGCTGGCGTTGTTGTTCGATGCCGATGCGCCATTGCGGCATGCCACACAGGTGGACGAGGAC
CTGGCGCTGGACGTGCTTGC

Downstream 100 bases:

>100_bases
CCGGTCATGCGATCTAAGTGGGGAGTTGGTGCGGGGCAGGAGGTTGGCCGGACTTGCCCCACGACAAGGCGCTTGACGCA
CACTGCACTCCACGACCACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MNVSADRLRLLRRQAGQADVPAPAKADDGDGDALHDAPAVDAQAADAAPVDEAAQPASGVHTQGTTPAPGHAPGVSAERL
RLLRRQVGGLTPAARKDDAIMPTRAQRAAVSGAALPTAGLPLRENAAARHGAVAARPNEARDASTRTRRALQAPMPAPPA
REASVFAWVEHDVRHKPALPSNVDVDAIIAVEADSARPWPTARSTATTSPASMSPPPPVQRRTDIAGLRKMIGLRERAVS
AHAPIRAPSTDRSLPGNEIAPGLHLIQAFLPQAIPTEALSLAFAKRDDAVDPMDLLFFDTETTGLAGGTGTRAFMIGVAD
WVVDAVQGNGLRVRQLMMSTMAAESAMLDLFRTWLTPRTVLSSYNGRCYDAPLLKTRYRLARRGDPISALDHVDLLFPTR
RRYRGTWENCKLSTIERQLLRVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLVAVDAQERNA
LTLARTP

Sequences:

>Translated_487_residues
MNVSADRLRLLRRQAGQADVPAPAKADDGDGDALHDAPAVDAQAADAAPVDEAAQPASGVHTQGTTPAPGHAPGVSAERL
RLLRRQVGGLTPAARKDDAIMPTRAQRAAVSGAALPTAGLPLRENAAARHGAVAARPNEARDASTRTRRALQAPMPAPPA
REASVFAWVEHDVRHKPALPSNVDVDAIIAVEADSARPWPTARSTATTSPASMSPPPPVQRRTDIAGLRKMIGLRERAVS
AHAPIRAPSTDRSLPGNEIAPGLHLIQAFLPQAIPTEALSLAFAKRDDAVDPMDLLFFDTETTGLAGGTGTRAFMIGVAD
WVVDAVQGNGLRVRQLMMSTMAAESAMLDLFRTWLTPRTVLSSYNGRCYDAPLLKTRYRLARRGDPISALDHVDLLFPTR
RRYRGTWENCKLSTIERQLLRVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLVAVDAQERNA
LTLARTP
>Mature_487_residues
MNVSADRLRLLRRQAGQADVPAPAKADDGDGDALHDAPAVDAQAADAAPVDEAAQPASGVHTQGTTPAPGHAPGVSAERL
RLLRRQVGGLTPAARKDDAIMPTRAQRAAVSGAALPTAGLPLRENAAARHGAVAARPNEARDASTRTRRALQAPMPAPPA
REASVFAWVEHDVRHKPALPSNVDVDAIIAVEADSARPWPTARSTATTSPASMSPPPPVQRRTDIAGLRKMIGLRERAVS
AHAPIRAPSTDRSLPGNEIAPGLHLIQAFLPQAIPTEALSLAFAKRDDAVDPMDLLFFDTETTGLAGGTGTRAFMIGVAD
WVVDAVQGNGLRVRQLMMSTMAAESAMLDLFRTWLTPRTVLSSYNGRCYDAPLLKTRYRLARRGDPISALDHVDLLFPTR
RRYRGTWENCKLSTIERQLLRVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLVAVDAQERNA
LTLARTP

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52376; Mature: 52376

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVSADRLRLLRRQAGQADVPAPAKADDGDGDALHDAPAVDAQAADAAPVDEAAQPASGV
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
HTQGTTPAPGHAPGVSAERLRLLRRQVGGLTPAARKDDAIMPTRAQRAAVSGAALPTAGL
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
PLRENAAARHGAVAARPNEARDASTRTRRALQAPMPAPPAREASVFAWVEHDVRHKPALP
CCCCCCHHHCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHCCCCCC
SNVDVDAIIAVEADSARPWPTARSTATTSPASMSPPPPVQRRTDIAGLRKMIGLRERAVS
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AHAPIRAPSTDRSLPGNEIAPGLHLIQAFLPQAIPTEALSLAFAKRDDAVDPMDLLFFDT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
ETTGLAGGTGTRAFMIGVADWVVDAVQGNGLRVRQLMMSTMAAESAMLDLFRTWLTPRTV
CCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LSSYNGRCYDAPLLKTRYRLARRGDPISALDHVDLLFPTRRRYRGTWENCKLSTIERQLL
HHCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHH
RVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLVAVDAQERNA
HHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
LTLARTP
EEEECCC
>Mature Secondary Structure
MNVSADRLRLLRRQAGQADVPAPAKADDGDGDALHDAPAVDAQAADAAPVDEAAQPASGV
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
HTQGTTPAPGHAPGVSAERLRLLRRQVGGLTPAARKDDAIMPTRAQRAAVSGAALPTAGL
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
PLRENAAARHGAVAARPNEARDASTRTRRALQAPMPAPPAREASVFAWVEHDVRHKPALP
CCCCCCHHHCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHCCCCCC
SNVDVDAIIAVEADSARPWPTARSTATTSPASMSPPPPVQRRTDIAGLRKMIGLRERAVS
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AHAPIRAPSTDRSLPGNEIAPGLHLIQAFLPQAIPTEALSLAFAKRDDAVDPMDLLFFDT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
ETTGLAGGTGTRAFMIGVADWVVDAVQGNGLRVRQLMMSTMAAESAMLDLFRTWLTPRTV
CCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LSSYNGRCYDAPLLKTRYRLARRGDPISALDHVDLLFPTRRRYRGTWENCKLSTIERQLL
HHCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHH
RVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLVAVDAQERNA
HHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
LTLARTP
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906 [H]