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The map label for this gene is 78045574

Identifier: 78045574

GI number: 78045574

Start: 18729

End: 19856

Strand: Reverse

Name: 78045574

Synonym: XCV0018

Alternate gene names: NA

Gene position: 19856-18729 (Counterclockwise)

Preceding gene: 78045575

Following gene: 78045571

Centisome position: 0.38

GC content: 65.78

Gene sequence:

>1128_bases
ATGCAGAAGAACTCTTTCCCCGGCACGAGCGCGGCAGCTGAGCGCGATGTCCGCAGCTCGCGTACGGTCATCAAGGGGCG
CGGCACCACCGCCTACGTGCCCGGCCGCTTCGCGGTCACCACCGCCGTCGAGATAGACGATGGCTGGGGCGCGCTCGATG
CCGACGGCGAGGCCGCCATGCGTCCCAAGACCGTGGTGGCCGAGGAAATCGCGCGCAGCATCATCAGCCGCAACAACTCG
CCCGACATCGGCTTCTCGCAGTCGGTGAACCCGTACCGGGGATGTGAGCACGGCTGCGTGTACTGCTTTGCCAGGCCCTC
GCACGCGTATCTGGATCTGTCGCCAGGGCTGGATTTCGAAACGCGGATCTTCGCCAAGCCGAATGCGGCAGCGCTGCTGC
GCGCAGAGATCGCACGCCCGTCCTACCAGTGCTCGCCGATCGCGTTGGGGATCAATACCGACGCCTACCAGCCCACCGAG
CGGCGCCTGCACATTTCCCGGCAATGCCTGCAAGTGCTTGCGCAGGCCCGTCACCCGGTCAGCTTCGTGACCAAGGCAGC
GTTGATCGAACGCGACATCGATGTGCTGGCCGAGATGGCGCAGCACAACCTGGTGTCGGTGTATTTCTCGGTCACCACGC
TCGACAATCGCCTCGCGGCCAAGATGGAGCCGCGCGCCGCCGCGCCGCACGCGCGACTGCGCGCGATGCAGGCGCTGCAC
GCTGCCGGCGTACCGGTGGGCGTGCTGGTCGCTCCGGTCATCCCGATGATCAACGACAAGGAACTGGAGCGCATCCTGGA
GGCGGCCGCAGCCCACGGCGCACGTTCGGCCGGCTACGTGTTGCTGCGCCTGCCGCACGAGCTCACCCAGTTATGGCGCG
AGTGGCTCGAGCTGCACTATCCCGATCGTGCCAAGCATGTCATGAGCCTGATCCAGCAGATGCGCGGCGGCAAGGACTAC
GACAGCCGCTTCGGCAAGCGCATGGTCGGCGAAGGCCCGTTTGCAGAACTGATCGCGCAGCGGTTTTCCATCGCGTATCG
GCGCCTTGGATTCGGGCGGCTGCCCAGGCTCGATACCACGCAGTTCCGTCCACCCAGACCGGACACGCCGCAGCTTAATC
TTTTTTAA

Upstream 100 bases:

>100_bases
GCTGCGACTGCGCCCTGCACCGCGTCGTAGCGGTTGTGCTCGCTCCTCGGACCGGTACACGTTGCTTGCACCAGGCTTCG
TTAGTAAGAATACTAACGGC

Downstream 100 bases:

>100_bases
TTTTTCTGTGCGGTTTGCGATGCTAGTTCGAGTCTGGCTAAGAATCGCAGTGTCTCCTATCGTTATGGGGAGATAGGCGG
GTATTCCGAGATCGGGGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQKNSFPGTSAAAERDVRSSRTVIKGRGTTAYVPGRFAVTTAVEIDDGWGALDADGEAAMRPKTVVAEEIARSIISRNNS
PDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPTE
RRLHISRQCLQVLAQARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
AAGVPVGVLVAPVIPMINDKELERILEAAAAHGARSAGYVLLRLPHELTQLWREWLELHYPDRAKHVMSLIQQMRGGKDY
DSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTQFRPPRPDTPQLNLF

Sequences:

>Translated_375_residues
MQKNSFPGTSAAAERDVRSSRTVIKGRGTTAYVPGRFAVTTAVEIDDGWGALDADGEAAMRPKTVVAEEIARSIISRNNS
PDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPTE
RRLHISRQCLQVLAQARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
AAGVPVGVLVAPVIPMINDKELERILEAAAAHGARSAGYVLLRLPHELTQLWREWLELHYPDRAKHVMSLIQQMRGGKDY
DSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTQFRPPRPDTPQLNLF
>Mature_375_residues
MQKNSFPGTSAAAERDVRSSRTVIKGRGTTAYVPGRFAVTTAVEIDDGWGALDADGEAAMRPKTVVAEEIARSIISRNNS
PDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPTE
RRLHISRQCLQVLAQARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
AAGVPVGVLVAPVIPMINDKELERILEAAAAHGARSAGYVLLRLPHELTQLWREWLELHYPDRAKHVMSLIQQMRGGKDY
DSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTQFRPPRPDTPQLNLF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 41562; Mature: 41562

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKNSFPGTSAAAERDVRSSRTVIKGRGTTAYVPGRFAVTTAVEIDDGWGALDADGEAAM
CCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEECCCEEEEEEEEECCCCCCCCCCCCCCC
RPKTVVAEEIARSIISRNNSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCEEECCCCCCCC
TRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPTERRLHISRQCLQVLAQARHPV
EEEEECCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
SFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AAGVPVGVLVAPVIPMINDKELERILEAAAAHGARSAGYVLLRLPHELTQLWREWLELHY
HCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCC
PDRAKHVMSLIQQMRGGKDYDSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTT
CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QFRPPRPDTPQLNLF
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MQKNSFPGTSAAAERDVRSSRTVIKGRGTTAYVPGRFAVTTAVEIDDGWGALDADGEAAM
CCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEECCCEEEEEEEEECCCCCCCCCCCCCCC
RPKTVVAEEIARSIISRNNSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCEEECCCCCCCC
TRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPTERRLHISRQCLQVLAQARHPV
EEEEECCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
SFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AAGVPVGVLVAPVIPMINDKELERILEAAAAHGARSAGYVLLRLPHELTQLWREWLELHY
HCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCC
PDRAKHVMSLIQQMRGGKDYDSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTT
CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QFRPPRPDTPQLNLF
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]