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The map label for this gene is 78044976

Identifier: 78044976

GI number: 78044976

Start: 725455

End: 726165

Strand: Direct

Name: 78044976

Synonym: CHY_0820

Alternate gene names: NA

Gene position: 725455-726165 (Clockwise)

Preceding gene: 78043032

Following gene: 78044842

Centisome position: 30.21

GC content: 38.82

Gene sequence:

>711_bases
ATGATACCTTTAAGAGATGTAAACCCGAGCCGAAAATTTCCGGTGATGACAATTTTAATAATCCTGGCCAATGTGCTTGT
ATTTATTTTTCAAATTTCACTTCCCCGGGAGACGAGCGAGCTTTTTTTGCATACCTTTGGTTTTACTCCCCTGCGCCTGA
CCGAAGGATTAAGACAAGGCCTATTGTCAGAGATAATCTGGAGTGGAGTAACCCTCTTTACCAGTATGTTTTTACATGGA
AGCTTTATACATCTTATTAGCAATATGTGGGCTCTCTGGCTTTTTGGGGATAATGTGGAAGAACGCATGGGGCACTTAAA
ATTTTTATTGTTTTATTTTTTAAGCGGGATTGTAGCAATGACAGCGCATTACGTATTTAATTTTGCTTCGGACATTGTTG
CAGTTGGGGCTTCGGGAGCAATTGCCGGAGTGATGGGGGCTTACTTTGTCCTTTTTCCCTTGGCTAAAATTGTGACTTTA
TTTTTTTTAATTTTTATCCCAATTTTTATTGACGTTCCGGCTTTCATTTATATTGGCTTGTGGTATATCTCGCAGCTTTC
CAATGGCATCTTAACTTTATTTGGCCCAGTTTTTGGGTTTGGGATAGCATGGTGGGCCCATATCGGAGGTTTTTTATTTG
GGATATTAGTTGGTCCAAGGTATAAACGGCGAAAAAGAACTATTTATTTCGACAATTATTTTATTGTTTAG

Upstream 100 bases:

>100_bases
GAAGGTAAATAACACATAGACGGCGAAATATTTAACTCTACCCTTCGAGTTTAAAGCCTCCAATTTAAATTAACTCAGTA
AAGAGAAAAGGAGAATAAAG

Downstream 100 bases:

>100_bases
GAAATTATTCTTTGATTCTTACTGTGGAACTGCAGTAAAATTTGAGGAAGTGCTTATAAAGTATTTGGCGTAAATACGCC
AATAAGAGGAAAGAAATAAA

Product: rhomboid family protein

Products: NA

Alternate protein names: Peptidase; Rhomboid-Like Protein; Integral Membrane Protein; S54 Family Peptidase; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MIPLRDVNPSRKFPVMTILIILANVLVFIFQISLPRETSELFLHTFGFTPLRLTEGLRQGLLSEIIWSGVTLFTSMFLHG
SFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAMTAHYVFNFASDIVAVGASGAIAGVMGAYFVLFPLAKIVTL
FFLIFIPIFIDVPAFIYIGLWYISQLSNGILTLFGPVFGFGIAWWAHIGGFLFGILVGPRYKRRKRTIYFDNYFIV

Sequences:

>Translated_236_residues
MIPLRDVNPSRKFPVMTILIILANVLVFIFQISLPRETSELFLHTFGFTPLRLTEGLRQGLLSEIIWSGVTLFTSMFLHG
SFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAMTAHYVFNFASDIVAVGASGAIAGVMGAYFVLFPLAKIVTL
FFLIFIPIFIDVPAFIYIGLWYISQLSNGILTLFGPVFGFGIAWWAHIGGFLFGILVGPRYKRRKRTIYFDNYFIV
>Mature_236_residues
MIPLRDVNPSRKFPVMTILIILANVLVFIFQISLPRETSELFLHTFGFTPLRLTEGLRQGLLSEIIWSGVTLFTSMFLHG
SFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAMTAHYVFNFASDIVAVGASGAIAGVMGAYFVLFPLAKIVTL
FFLIFIPIFIDVPAFIYIGLWYISQLSNGILTLFGPVFGFGIAWWAHIGGFLFGILVGPRYKRRKRTIYFDNYFIV

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26843; Mature: 26843

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLRDVNPSRKFPVMTILIILANVLVFIFQISLPRETSELFLHTFGFTPLRLTEGLRQG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
LLSEIIWSGVTLFTSMFLHGSFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
TAHYVFNFASDIVAVGASGAIAGVMGAYFVLFPLAKIVTLFFLIFIPIFIDVPAFIYIGL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYISQLSNGILTLFGPVFGFGIAWWAHIGGFLFGILVGPRYKRRKRTIYFDNYFIV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCEEEC
>Mature Secondary Structure
MIPLRDVNPSRKFPVMTILIILANVLVFIFQISLPRETSELFLHTFGFTPLRLTEGLRQG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
LLSEIIWSGVTLFTSMFLHGSFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
TAHYVFNFASDIVAVGASGAIAGVMGAYFVLFPLAKIVTLFFLIFIPIFIDVPAFIYIGL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYISQLSNGILTLFGPVFGFGIAWWAHIGGFLFGILVGPRYKRRKRTIYFDNYFIV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA