Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 78044842

GI number: 78044842

Start: 726453

End: 726869

Strand: Direct

Name: (hspc4-1 [H]

Synonym: CHY_0821

Alternate gene names: 78044842

Gene position: 726453-726869 (Clockwise)

Preceding gene: 78044976

Following gene: 78042643

Centisome position: 30.25

GC content: 38.85

Gene sequence:

>417_bases
ATGCTCATGAGAAAATTTGATCCGTTCAGAGAAGTGTTAGATTTAAATCGCCTGTTTGCCGAAGCCTTTGCACCGATTAG
TAGAGGTGTATCAATCCCAAGGGTAGATATTCTTGATGAAGGCGATGAAATATTAGTTAAGGCAGAACTCCCTGGCATAG
AAGATAAGAACCAGATTGAGCTGTATGTCCAAAACGATCATCTAATTATTAAAGGACAGGTTAAAGATGAAATAGAAGCA
AGAAACGATAAATTCTATCGCAAGGAAATATTTACAGGCAGCTTTGAGCGAGTAGTGTACTTGCCGGTAGAAGTAGAACC
TGCCAAAGCAACTGCTGAATATAAAAACGGCATTTTAAACATCAGGCTCAAGAAGGCACAGGATAATCTGCGAGGATTTA
AAGTGGATATCCAATAA

Upstream 100 bases:

>100_bases
CTTGCACAAAAGTCAGAGAAGGTCAATAATTATAAGTGGAAGGTCAAGGAAAGTTAAAATAAAAATAAAACCTAAAAATC
TATGACAGGGGGTGGTAGCC

Downstream 100 bases:

>100_bases
TCCTCCTCTCCCCGAAGTTTTAAGGCTTCGGGGTTTTTTTTACTTATTTAGTTTTTGTAGCTTAAAAATTAGAAGAATAA
GTATTACTTTTTGTGTAATT

Product: hsp20/alpha crystallin family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MLMRKFDPFREVLDLNRLFAEAFAPISRGVSIPRVDILDEGDEILVKAELPGIEDKNQIELYVQNDHLIIKGQVKDEIEA
RNDKFYRKEIFTGSFERVVYLPVEVEPAKATAEYKNGILNIRLKKAQDNLRGFKVDIQ

Sequences:

>Translated_138_residues
MLMRKFDPFREVLDLNRLFAEAFAPISRGVSIPRVDILDEGDEILVKAELPGIEDKNQIELYVQNDHLIIKGQVKDEIEA
RNDKFYRKEIFTGSFERVVYLPVEVEPAKATAEYKNGILNIRLKKAQDNLRGFKVDIQ
>Mature_138_residues
MLMRKFDPFREVLDLNRLFAEAFAPISRGVSIPRVDILDEGDEILVKAELPGIEDKNQIELYVQNDHLIIKGQVKDEIEA
RNDKFYRKEIFTGSFERVVYLPVEVEPAKATAEYKNGILNIRLKKAQDNLRGFKVDIQ

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 15979; Mature: 15979

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMRKFDPFREVLDLNRLFAEAFAPISRGVSIPRVDILDEGDEILVKAELPGIEDKNQIE
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEE
LYVQNDHLIIKGQVKDEIEARNDKFYRKEIFTGSFERVVYLPVEVEPAKATAEYKNGILN
EEECCCEEEEECCCCCHHHHCCCHHEEHHHCCCCCCEEEEEEEEECCCCCCHHHHCCEEE
IRLKKAQDNLRGFKVDIQ
EEEECCCCCCCEEEEEEC
>Mature Secondary Structure
MLMRKFDPFREVLDLNRLFAEAFAPISRGVSIPRVDILDEGDEILVKAELPGIEDKNQIE
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEE
LYVQNDHLIIKGQVKDEIEARNDKFYRKEIFTGSFERVVYLPVEVEPAKATAEYKNGILN
EEECCCEEEEECCCCCHHHHCCCHHEEHHHCCCCCCEEEEEEEEECCCCCCHHHHCCEEE
IRLKKAQDNLRGFKVDIQ
EEEECCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA