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The map label for this gene is rpfG [H]

Identifier: 78044800

GI number: 78044800

Start: 781228

End: 782304

Strand: Direct

Name: rpfG [H]

Synonym: CHY_0881

Alternate gene names: 78044800

Gene position: 781228-782304 (Clockwise)

Preceding gene: 78043169

Following gene: 78044194

Centisome position: 32.53

GC content: 32.13

Gene sequence:

>1077_bases
ATGTTATCTATCAATATTACTTCCTTAGCTTTATCTTTAAACAGAAACTTTGGGTTATATGAAAAAAAAGAGCATCTTTA
CCGTTTAAGAATGGCATTGATTGGTTTGCTTATTGGAAAAAAGCTAAATTTAAGTGAAGAAGAGATGAAGAAAATATTTA
TCCATTCTTTGCTTAAAGGCAATCTGGATTCAAATTGTAATATAATTTCAAATTCTATCGAAGAAATAATATGTCTGGCA
AGATTAGTAGCAAAATTATTAGGGAGAAGAAATGTTTGCATTTTTGTTAAAGATAAGGTACGTAAATATATTTTAAACGA
ATATTTAAATGTTTTTCCAATGACTCCGGTAGTTATGGCACTTTTGGAACTTATGGAGGAAGAGGCATTTTGGTTTAATT
TGGAAAAAGAGTTTTTGTTTTTGGATATTTTAAAAATGACAATGGGTTGGGAAGACAACAAGATTCTTAAAGAAGAAGAG
ATTAAAAAAGTTGCTAACTTACTTACCCGTTTAATTGAGAATAAAGATGTACAAACTCGAGAACATTCTCAAAGGGTAGC
GAGAATTGCCTTACGACTAAGCGAAGAATTAAAATTGTCTGAGGAGCAAATTCAGAAAGTTGAGCTTGCAAGTCTAATCC
ATGATATAGGCAAACTTGCTATACCCGCTAAAATACTTCATAAACCAGGCAAGTTAACTGAACGTGAGTTTTTATTAGTA
AAATCGCATCCTTTTTACACGTACAAACTTTTTGAAACTGTTGACGGATTAGATGAAGTTGCTAAATGGGCAGGATACCA
TCATGAAAAGCTGGATGGTAGTGGGTATCCTTTTAAGGTTAAAAAAGAAGATTTGGATATTGAAGCACGTGTTATCCAGG
TGGCGGATATAACAGCTGCTTTGTTAGAAAAAAGAAGTTACCGGGATTCAATGGATAAAGAACAGGTGATAAAAATATTA
AGACTTGAAGCTCAGAACAACAAGATTGATTTGGAAGTTTCGGAGTTAACACAAAGATTGTTGCTGGAGGACGAATTATT
AAAAGATGATATAACTTATTCTATAGCTATCCTTTAA

Upstream 100 bases:

>100_bases
AAACACTCTTTTTAGCGTTTATGACGAATATTACACCCTTTTGCCTTAGGGTAAAAGGGTTTTTTGATAAAAAGATAGAG
AGTAGAGAAGGGGAGGTTAA

Downstream 100 bases:

>100_bases
GCAACATAAAATGGGGGAATTAAAAATGATAGCTTGGCATGATAGTATTGGAAGCAATTTATTAAACGTAACAGTAAATC
TTTTAGAATTTAAAAATGAA

Product: HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MLSINITSLALSLNRNFGLYEKKEHLYRLRMALIGLLIGKKLNLSEEEMKKIFIHSLLKGNLDSNCNIISNSIEEIICLA
RLVAKLLGRRNVCIFVKDKVRKYILNEYLNVFPMTPVVMALLELMEEEAFWFNLEKEFLFLDILKMTMGWEDNKILKEEE
IKKVANLLTRLIENKDVQTREHSQRVARIALRLSEELKLSEEQIQKVELASLIHDIGKLAIPAKILHKPGKLTEREFLLV
KSHPFYTYKLFETVDGLDEVAKWAGYHHEKLDGSGYPFKVKKEDLDIEARVIQVADITAALLEKRSYRDSMDKEQVIKIL
RLEAQNNKIDLEVSELTQRLLLEDELLKDDITYSIAIL

Sequences:

>Translated_358_residues
MLSINITSLALSLNRNFGLYEKKEHLYRLRMALIGLLIGKKLNLSEEEMKKIFIHSLLKGNLDSNCNIISNSIEEIICLA
RLVAKLLGRRNVCIFVKDKVRKYILNEYLNVFPMTPVVMALLELMEEEAFWFNLEKEFLFLDILKMTMGWEDNKILKEEE
IKKVANLLTRLIENKDVQTREHSQRVARIALRLSEELKLSEEQIQKVELASLIHDIGKLAIPAKILHKPGKLTEREFLLV
KSHPFYTYKLFETVDGLDEVAKWAGYHHEKLDGSGYPFKVKKEDLDIEARVIQVADITAALLEKRSYRDSMDKEQVIKIL
RLEAQNNKIDLEVSELTQRLLLEDELLKDDITYSIAIL
>Mature_358_residues
MLSINITSLALSLNRNFGLYEKKEHLYRLRMALIGLLIGKKLNLSEEEMKKIFIHSLLKGNLDSNCNIISNSIEEIICLA
RLVAKLLGRRNVCIFVKDKVRKYILNEYLNVFPMTPVVMALLELMEEEAFWFNLEKEFLFLDILKMTMGWEDNKILKEEE
IKKVANLLTRLIENKDVQTREHSQRVARIALRLSEELKLSEEQIQKVELASLIHDIGKLAIPAKILHKPGKLTEREFLLV
KSHPFYTYKLFETVDGLDEVAKWAGYHHEKLDGSGYPFKVKKEDLDIEARVIQVADITAALLEKRSYRDSMDKEQVIKIL
RLEAQNNKIDLEVSELTQRLLLEDELLKDDITYSIAIL

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 41610; Mature: 41610

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSINITSLALSLNRNFGLYEKKEHLYRLRMALIGLLIGKKLNLSEEEMKKIFIHSLLKG
CEEEEEEHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
NLDSNCNIISNSIEEIICLARLVAKLLGRRNVCIFVKDKVRKYILNEYLNVFPMTPVVMA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCHHHHHHH
LLELMEEEAFWFNLEKEFLFLDILKMTMGWEDNKILKEEEIKKVANLLTRLIENKDVQTR
HHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
EHSQRVARIALRLSEELKLSEEQIQKVELASLIHDIGKLAIPAKILHKPGKLTEREFLLV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEE
KSHPFYTYKLFETVDGLDEVAKWAGYHHEKLDGSGYPFKVKKEDLDIEARVIQVADITAA
ECCCCEEEHHHHHHCCHHHHHHHHCCCHHCCCCCCCCEEEECCCCCCCHHEEHHHHHHHH
LLEKRSYRDSMDKEQVIKILRLEAQNNKIDLEVSELTQRLLLEDELLKDDITYSIAIL
HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure
MLSINITSLALSLNRNFGLYEKKEHLYRLRMALIGLLIGKKLNLSEEEMKKIFIHSLLKG
CEEEEEEHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
NLDSNCNIISNSIEEIICLARLVAKLLGRRNVCIFVKDKVRKYILNEYLNVFPMTPVVMA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCHHHHHHH
LLELMEEEAFWFNLEKEFLFLDILKMTMGWEDNKILKEEEIKKVANLLTRLIENKDVQTR
HHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
EHSQRVARIALRLSEELKLSEEQIQKVELASLIHDIGKLAIPAKILHKPGKLTEREFLLV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEE
KSHPFYTYKLFETVDGLDEVAKWAGYHHEKLDGSGYPFKVKKEDLDIEARVIQVADITAA
ECCCCEEEHHHHHHCCHHHHHHHHCCCHHCCCCCCCCEEEECCCCCCCHHEEHHHHHHHH
LLEKRSYRDSMDKEQVIKILRLEAQNNKIDLEVSELTQRLLLEDELLKDDITYSIAIL
HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]