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The map label for this gene is ydaM [H]

Identifier: 78043169

GI number: 78043169

Start: 778979

End: 780985

Strand: Direct

Name: ydaM [H]

Synonym: CHY_0880

Alternate gene names: 78043169

Gene position: 778979-780985 (Clockwise)

Preceding gene: 78043876

Following gene: 78044800

Centisome position: 32.44

GC content: 42.4

Gene sequence:

>2007_bases
TTGAAGGATAAAAAAATATTGATCGTGGAAGACAGTAAATTTCAAGCAAAAACCATAGCCAATATCCTGAATAAATACGG
TTATACCGTTGAAATTGCTCTAACCGGTGAAGCGGCAGTCGAAAAAGTAAGTGGTGGATGGTACCCTGATCTCATCTTAA
TGGATATTGAGCTGGGAGAAGGGATGGATGGAGTACAAACAGCGCTGGCAATTCAGCAGATTAGTGAGCTGCCCGTTGTT
TTTCTAACTGCGCATACTGAACCAGCAGTGGTAGAAAAAATTCGTTCTGTTACGGCCTACGGATATGTAATGAAAAGTGC
TACTGAACAAGTGCTGATAACCATAGTTGAAATGGCCTTGCGGCTTTATGAGGCAAACGTCCATGCAAACATGTACTGGC
AGATATTAGAGGATTCGCTAAATGAAATTTATATTTTTAACCCTGAAACATTGAGATTTCATGTGGTCAACCGTGGTGCC
AGGAAGAACCTGGGATATACCCTGGAAGAATTGAACACCATGACACCCCTTGACCTTAAACCGGAATTTGACCTTAAAAG
TTTCAGAGCTCTGCTTGAACCCTTGCTGAGCGGTAAGGAGGAACAAATTGTTTTTTATACTGTACACCGGCGGAAGGATG
GTTCGCTATATCCCGTAGAAGTTCACCTGCAGCTTTTTGACTACCGGGGAGAAAAATTGTGCCTGGCCCTGGTTATTGAT
TTGACCGAAAGGAAAGCGCTGGAAGAGGAAAACAGGCGTAAAGAAGAACAGCTCCGTTTGATGTTAGAAGCCTTACCCAA
TCCTACATATCTCATTAACAGAGAACGACAAATAATTGCCTTAAATCAGGTGGCAAAGGAACGGGGAGCAGTAGTTGGCG
ATTATTGCTGGCACAGCATTCATCATTTAAAAACTATTTCTCCTGTTGAACGTCAATTTTTTGAAAACACCGGAAAACCG
CTGCCCGGTACCAAGTGTTATTTTTGCCGGGCGGATGAGGCTTTAAACCGAAAGCAAAAAGAAAATTGCGAGGTAAATTT
GGATGGTTTATTCTGGAATATCTGGTGGGTACCGATCGATGAAAATACCTATCTTCACTATGTTATCGATGTAACAAAAT
ATAAAAAAATGGAAGAAGAAATAAGGGAGCAAAAGGAATTTTTACGGCTTATTCTTGACAGTATGCCGGCTGGAGTTATG
GTCGTTGATGCTAAAACTTTCAGGATTGAAAACGTAAACCTGGAAGCTGCTGCGATGATTGGAGCATCTCCGGAAGAGAT
TATTGGCAAAAGCTGCTTTGAAATATTTCCGGAAAGTAAGGGATTATGTCTGATTACAGCGGTAGGTCAGGAAATGGATT
GGGCGGAGCGAATTTTACATAGAATGGATGGCTCTCAATTGCCTGTACTTAAAATCGTTAAACGACTTAGAACTAAAAGC
GGCGAAAAGTTAATTGAGACTTTTATAGACCTTACGGAACGCAAAAAGCTGGAGGAACAGCTTTACCGCTTATCCATTAC
CGATTATTTAACCCAGGCTTACAACCGCCGTTATTTTACAGAAATGTTAGAACGGGAAATAGAACGTGCCAAAAGGACTA
AAATGCCCTTTGCGTTAATTATGTTAGATATCGACCATTTTAAGAATGTAAATGACCGTTTTGGACATGCTGCTGGCGAT
TTGGTTTTAAAAACCCTGGCAAATTTGATTAAAAACAGGATTCGTCAAACCGACTGTCTGGCCCGCTGGGGTGGGGAAGA
GTTTGTGATTCTCTTACCGAATACTCCAGTGGAAAAAGCAGCAGGCTTAGCGGAAGAATTGCGGGAGCAGTTAAGCATGC
TGGAGATTCCGGGCGTAGGCCGGGTGACCGCCAGTTTTGGGGTAACCGGTTACTGTCCCGGAGATACGCTTGATACGTTA
TTAATGCGTGCTGACCAAATGCTGTATACAGCCAAAGCTTCAGGAAGAAATTGTGTTCGTTTTTCCGAGAAATGTCCGGA
AAAGTAG

Upstream 100 bases:

>100_bases
GAAATATTGGAATTTTTTTATTTAAGAAGTAAAAAATATTACCGCCCCAAGAAACGTTTGGAAGCTTTGGAAGCTTGAAA
AAAGGGAGGCTTGACGGGGC

Downstream 100 bases:

>100_bases
GACTATCAATGAACAAAATACAACTTATAAGTTTGTTGAATTGTAAAAATATAACAATATTGGTAAAAAAAAAAAAAAAA
AAAATATATACAAATGGAAA

Product: response regulator/sensory box protein/GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVV
FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEANVHANMYWQILEDSLNEIYIFNPETLRFHVVNRGA
RKNLGYTLEELNTMTPLDLKPEFDLKSFRALLEPLLSGKEEQIVFYTVHRRKDGSLYPVEVHLQLFDYRGEKLCLALVID
LTERKALEEENRRKEEQLRLMLEALPNPTYLINRERQIIALNQVAKERGAVVGDYCWHSIHHLKTISPVERQFFENTGKP
LPGTKCYFCRADEALNRKQKENCEVNLDGLFWNIWWVPIDENTYLHYVIDVTKYKKMEEEIREQKEFLRLILDSMPAGVM
VVDAKTFRIENVNLEAAAMIGASPEEIIGKSCFEIFPESKGLCLITAVGQEMDWAERILHRMDGSQLPVLKIVKRLRTKS
GEKLIETFIDLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALIMLDIDHFKNVNDRFGHAAGD
LVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKAAGLAEELREQLSMLEIPGVGRVTASFGVTGYCPGDTLDTL
LMRADQMLYTAKASGRNCVRFSEKCPEK

Sequences:

>Translated_668_residues
MKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVV
FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEANVHANMYWQILEDSLNEIYIFNPETLRFHVVNRGA
RKNLGYTLEELNTMTPLDLKPEFDLKSFRALLEPLLSGKEEQIVFYTVHRRKDGSLYPVEVHLQLFDYRGEKLCLALVID
LTERKALEEENRRKEEQLRLMLEALPNPTYLINRERQIIALNQVAKERGAVVGDYCWHSIHHLKTISPVERQFFENTGKP
LPGTKCYFCRADEALNRKQKENCEVNLDGLFWNIWWVPIDENTYLHYVIDVTKYKKMEEEIREQKEFLRLILDSMPAGVM
VVDAKTFRIENVNLEAAAMIGASPEEIIGKSCFEIFPESKGLCLITAVGQEMDWAERILHRMDGSQLPVLKIVKRLRTKS
GEKLIETFIDLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALIMLDIDHFKNVNDRFGHAAGD
LVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKAAGLAEELREQLSMLEIPGVGRVTASFGVTGYCPGDTLDTL
LMRADQMLYTAKASGRNCVRFSEKCPEK
>Mature_668_residues
MKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVV
FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEANVHANMYWQILEDSLNEIYIFNPETLRFHVVNRGA
RKNLGYTLEELNTMTPLDLKPEFDLKSFRALLEPLLSGKEEQIVFYTVHRRKDGSLYPVEVHLQLFDYRGEKLCLALVID
LTERKALEEENRRKEEQLRLMLEALPNPTYLINRERQIIALNQVAKERGAVVGDYCWHSIHHLKTISPVERQFFENTGKP
LPGTKCYFCRADEALNRKQKENCEVNLDGLFWNIWWVPIDENTYLHYVIDVTKYKKMEEEIREQKEFLRLILDSMPAGVM
VVDAKTFRIENVNLEAAAMIGASPEEIIGKSCFEIFPESKGLCLITAVGQEMDWAERILHRMDGSQLPVLKIVKRLRTKS
GEKLIETFIDLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALIMLDIDHFKNVNDRFGHAAGD
LVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKAAGLAEELREQLSMLEIPGVGRVTASFGVTGYCPGDTLDTL
LMRADQMLYTAKASGRNCVRFSEKCPEK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=283, Percent_Identity=32.5088339222615, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788381, Length=308, Percent_Identity=30.8441558441558, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=41.7721518987342, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87082007, Length=344, Percent_Identity=29.3604651162791, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786584, Length=195, Percent_Identity=33.8461538461538, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=30.5882352941176, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1787816, Length=220, Percent_Identity=30.4545454545455, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081974, Length=157, Percent_Identity=32.484076433121, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=291, Percent_Identity=26.4604810996564, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=33.7349397590361, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=32.0987654320988, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081977, Length=319, Percent_Identity=24.7648902821317, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787056, Length=174, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 76742; Mature: 76742

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGE
CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCCCEEEEEEECCC
GMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL
CCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLYEANVHANMYWQILEDSLNEIYIFNPETLRFHVVNRGARKNLGYTLEELNTMTPLDLK
HHHHCCCCHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCCC
PEFDLKSFRALLEPLLSGKEEQIVFYTVHRRKDGSLYPVEVHLQLFDYRGEKLCLALVID
CCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEHHHHH
LTERKALEEENRRKEEQLRLMLEALPNPTYLINRERQIIALNQVAKERGAVVGDYCWHSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEHHHHHHHHCCEEHHHHHHHH
HHLKTISPVERQFFENTGKPLPGTKCYFCRADEALNRKQKENCEVNLDGLFWNIWWVPID
HHHHCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHCCHHHCCCEEEEEEEEEEEEEEEEC
ENTYLHYVIDVTKYKKMEEEIREQKEFLRLILDSMPAGVMVVDAKTFRIENVNLEAAAMI
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECCCEEEHEEE
GASPEEIIGKSCFEIFPESKGLCLITAVGQEMDWAERILHRMDGSQLPVLKIVKRLRTKS
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC
GEKLIETFIDLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
MLDIDHFKNVNDRFGHAAGDLVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKA
EEEHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
AGLAEELREQLSMLEIPGVGRVTASFGVTGYCPGDTLDTLLMRADQMLYTAKASGRNCVR
HHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHEEECCCCCCEEE
FSEKCPEK
HHHCCCCC
>Mature Secondary Structure
MKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGE
CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCCCEEEEEEECCC
GMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL
CCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLYEANVHANMYWQILEDSLNEIYIFNPETLRFHVVNRGARKNLGYTLEELNTMTPLDLK
HHHHCCCCHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCCC
PEFDLKSFRALLEPLLSGKEEQIVFYTVHRRKDGSLYPVEVHLQLFDYRGEKLCLALVID
CCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEHHHHH
LTERKALEEENRRKEEQLRLMLEALPNPTYLINRERQIIALNQVAKERGAVVGDYCWHSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEHHHHHHHHCCEEHHHHHHHH
HHLKTISPVERQFFENTGKPLPGTKCYFCRADEALNRKQKENCEVNLDGLFWNIWWVPID
HHHHCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHCCHHHCCCEEEEEEEEEEEEEEEEC
ENTYLHYVIDVTKYKKMEEEIREQKEFLRLILDSMPAGVMVVDAKTFRIENVNLEAAAMI
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECCCEEEHEEE
GASPEEIIGKSCFEIFPESKGLCLITAVGQEMDWAERILHRMDGSQLPVLKIVKRLRTKS
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC
GEKLIETFIDLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
MLDIDHFKNVNDRFGHAAGDLVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKA
EEEHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
AGLAEELREQLSMLEIPGVGRVTASFGVTGYCPGDTLDTLLMRADQMLYTAKASGRNCVR
HHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHEEECCCCCCEEE
FSEKCPEK
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]