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The map label for this gene is yxkH [H]

Identifier: 78044641

GI number: 78044641

Start: 240469

End: 241407

Strand: Direct

Name: yxkH [H]

Synonym: CHY_0274

Alternate gene names: 78044641

Gene position: 240469-241407 (Clockwise)

Preceding gene: 78043705

Following gene: 78044140

Centisome position: 10.01

GC content: 43.45

Gene sequence:

>939_bases
ATGAAGCGGATATTACTTGCCTTTTTACTGGCGTTAATTGCTGTGGCAAGTATTGTTACCGTCGGATGGCTTTCTTTTCC
CAGGGAAGCCTTTGCCGATTACCGGGAGCGAGGGGTACCGATTTTAATGTATCATAAGGTAAACCCCGACCCTAAAACCG
GCGGCCTTGGGCTTAGAGTTTTGCCACGGGAGTTTGACTGGCAGATGCGCTTTTTAAAGGAGCATGGTTTTCACACGGTA
TCTTTGGATGAAGCGGTGGATTATCTTGAATTCGGTAAGCCCTTACCGGAAAAACCAATTGTGATAACTTTTGATGATGG
TTACCGGGATAATTACGTTTATGCCTTTCCCATTTTAAAAAAATACGGGTTTCGTGCTACAATCTTTATAATTACCGGAA
TTGTTGGGAAAACTAACGAGTGGGATGAGCGGGAAGGAAAGCCTACCAATTACATGTTAACCTGGAAACAGATAGATGAA
ATGGCCAATTACGGGATTGAATTTGGCGCTCATACCGTTAACCATCCCCGGCTAACAAAAGTACCGCTGGAATTAGCGGA
AAAGGAAATTTTTAATTCCAAAAAAATGTTAGAAGCGCATTTTAAGCGCCCGGTAAAATATTTTTGTTATCCCTATGGTC
TTTACAATGACCAAATTGTAGAAATTGTAAAAAAAGCCGGTTTTCGAGCTGCCACTACTACCCAGCTGGGAATTAATGCC
CGGGGTTGCGATTTGTACCGCTTAAAACGCTTGCGGGTTACCGGCCACATGAGTCGGAGGCAATTTGTGGAGCAGTTAGA
AAAATATTTAAGGGAAGATACGTGGAAAAGGGAGCATAAAAAATTTCTACCGGGTTATGTTAAAGATACAATCCTTCCTT
TATTCCCGGGGCGCTCCGGAAGTACCACTCCTGGCCGGTCAGGTGGTTGTATGGTATAA

Upstream 100 bases:

>100_bases
GCAGTATTTACGCCATGATTCGGAGAAACTGGCCCGGGTAATTATAAATTTTTACCGGAAGGAAATTGCGGAAAAAATTT
AAGCAAATGGGGGAAAATAG

Downstream 100 bases:

>100_bases
TTTTTTTGAGGTGGTAACATGTCTTTTGCCCGGGAAACGAAAGAAGAGCTGGCCCACATTATCCCCCAGAAAAGCTGCTG
CCAGAGGGCGGAACTGGGAG

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MKRILLAFLLALIAVASIVTVGWLSFPREAFADYRERGVPILMYHKVNPDPKTGGLGLRVLPREFDWQMRFLKEHGFHTV
SLDEAVDYLEFGKPLPEKPIVITFDDGYRDNYVYAFPILKKYGFRATIFIITGIVGKTNEWDEREGKPTNYMLTWKQIDE
MANYGIEFGAHTVNHPRLTKVPLELAEKEIFNSKKMLEAHFKRPVKYFCYPYGLYNDQIVEIVKKAGFRAATTTQLGINA
RGCDLYRLKRLRVTGHMSRRQFVEQLEKYLREDTWKREHKKFLPGYVKDTILPLFPGRSGSTTPGRSGGCMV

Sequences:

>Translated_312_residues
MKRILLAFLLALIAVASIVTVGWLSFPREAFADYRERGVPILMYHKVNPDPKTGGLGLRVLPREFDWQMRFLKEHGFHTV
SLDEAVDYLEFGKPLPEKPIVITFDDGYRDNYVYAFPILKKYGFRATIFIITGIVGKTNEWDEREGKPTNYMLTWKQIDE
MANYGIEFGAHTVNHPRLTKVPLELAEKEIFNSKKMLEAHFKRPVKYFCYPYGLYNDQIVEIVKKAGFRAATTTQLGINA
RGCDLYRLKRLRVTGHMSRRQFVEQLEKYLREDTWKREHKKFLPGYVKDTILPLFPGRSGSTTPGRSGGCMV
>Mature_312_residues
MKRILLAFLLALIAVASIVTVGWLSFPREAFADYRERGVPILMYHKVNPDPKTGGLGLRVLPREFDWQMRFLKEHGFHTV
SLDEAVDYLEFGKPLPEKPIVITFDDGYRDNYVYAFPILKKYGFRATIFIITGIVGKTNEWDEREGKPTNYMLTWKQIDE
MANYGIEFGAHTVNHPRLTKVPLELAEKEIFNSKKMLEAHFKRPVKYFCYPYGLYNDQIVEIVKKAGFRAATTTQLGINA
RGCDLYRLKRLRVTGHMSRRQFVEQLEKYLREDTWKREHKKFLPGYVKDTILPLFPGRSGSTTPGRSGGCMV

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=230, Percent_Identity=30, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787260, Length=304, Percent_Identity=25, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 36143; Mature: 36143

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRILLAFLLALIAVASIVTVGWLSFPREAFADYRERGVPILMYHKVNPDPKTGGLGLRV
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEE
LPREFDWQMRFLKEHGFHTVSLDEAVDYLEFGKPLPEKPIVITFDDGYRDNYVYAFPILK
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEHHHH
KYGFRATIFIITGIVGKTNEWDEREGKPTNYMLTWKQIDEMANYGIEFGAHTVNHPRLTK
HCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCEECCCCCCCCCCEEC
VPLELAEKEIFNSKKMLEAHFKRPVKYFCYPYGLYNDQIVEIVKKAGFRAATTTQLGINA
CHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEECEEEECCCC
RGCDLYRLKRLRVTGHMSRRQFVEQLEKYLREDTWKREHKKFLPGYVKDTILPLFPGRSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEECCCCCC
STTPGRSGGCMV
CCCCCCCCCCCC
>Mature Secondary Structure
MKRILLAFLLALIAVASIVTVGWLSFPREAFADYRERGVPILMYHKVNPDPKTGGLGLRV
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEE
LPREFDWQMRFLKEHGFHTVSLDEAVDYLEFGKPLPEKPIVITFDDGYRDNYVYAFPILK
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEHHHH
KYGFRATIFIITGIVGKTNEWDEREGKPTNYMLTWKQIDEMANYGIEFGAHTVNHPRLTK
HCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCEECCCCCCCCCCEEC
VPLELAEKEIFNSKKMLEAHFKRPVKYFCYPYGLYNDQIVEIVKKAGFRAATTTQLGINA
CHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEECEEEECCCC
RGCDLYRLKRLRVTGHMSRRQFVEQLEKYLREDTWKREHKKFLPGYVKDTILPLFPGRSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEECCCCCC
STTPGRSGGCMV
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]