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The map label for this gene is whiA

Identifier: 78044140

GI number: 78044140

Start: 241426

End: 242361

Strand: Direct

Name: whiA

Synonym: CHY_0275

Alternate gene names: 78044140

Gene position: 241426-242361 (Clockwise)

Preceding gene: 78044641

Following gene: 78044467

Centisome position: 10.05

GC content: 39.0

Gene sequence:

>936_bases
ATGTCTTTTGCCCGGGAAACGAAAGAAGAGCTGGCCCACATTATCCCCCAGAAAAGCTGCTGCCAGAGGGCGGAACTGGG
AGCATACGTCAAGATGCTGGGGGATTTGGGTATTTCCAATAAAAAGTTAAAACTATCCCTTAAAACTCCCCTTTCTTTTT
TGGCGCGAAAAATTTTAATTCTTCTAAAAAATAATGGTTTTAAAACTAAAACCCTGGTGCAGGACCACGGGAGACTTTCC
CAAAAAAATTTTTATTATATTGAAGTTGAAGAACATGTTGACGAACTTCTTAAAGAGTATGGCTTTATAGATGAAAAAGG
GAATTTATCTAACCGCATTAACGAAAATTATATAAAAAACGATTGTTGCCGGCGAAGTTTTCTAAGGGGCGTTTTTTTAG
CCGGTGGCTCTTTAAACGATCCGGCAGGAGACTATCATTTGGAATTAAACCTGCCCGATGAGGCTTTTGCCCGGCAGGTT
TCAAAGGTTTTGCAAAAGTACCATTTTACTTTTCGGCTCTTAAAACGGAAAACTGCTCCTTTTTTATATTTAAAGGATGC
GGAACAGATTTTATCCTTTTTAAGTTTGATAGGGGCTCACCAGTCGCTTTTAAAATTTGAAAACGTTCGGGTGGTGAAAG
AAGTTAGAAACCAGGTAAATCGCCTGGTTAACTGTGAAACGGCCAATATCAAAAAAGCGGTAAAAACGGCGGTGAAGCAA
ATTAAAGATATTGAATATATAGCGGAAAAAATAGGCCTTGATAACTTAGAACCGGCTTTAAAGGAAATTGCTCTTTTAAG
ACTGGACAATCCGGATTTAAGTTTAAAAGAACTGGGTAGTCTTTTAACCCCTCCCCTGACTAAATCCGGAGTTAATCACC
GCTTTCGCAAATTAGAACTTATAGCTGAAAAAATAAGAAACGGGGCGCTTGGGTAA

Upstream 100 bases:

>100_bases
TGTTAAAGATACAATCCTTCCTTTATTCCCGGGGCGCTCCGGAAGTACCACTCCTGGCCGGTCAGGTGGTTGTATGGTAT
AATTTTTTTGAGGTGGTAAC

Downstream 100 bases:

>100_bases
TGGATTTAGAAGGGCTTGATCGGGAACTTAGAGAAAAAACAATTTATGGAATTGAACTGGCCCGGGAAAGATTCAGGAAA
AGGAAGGAACCGAACAATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSFARETKEELAHIIPQKSCCQRAELGAYVKMLGDLGISNKKLKLSLKTPLSFLARKILILLKNNGFKTKTLVQDHGRLS
QKNFYYIEVEEHVDELLKEYGFIDEKGNLSNRINENYIKNDCCRRSFLRGVFLAGGSLNDPAGDYHLELNLPDEAFARQV
SKVLQKYHFTFRLLKRKTAPFLYLKDAEQILSFLSLIGAHQSLLKFENVRVVKEVRNQVNRLVNCETANIKKAVKTAVKQ
IKDIEYIAEKIGLDNLEPALKEIALLRLDNPDLSLKELGSLLTPPLTKSGVNHRFRKLELIAEKIRNGALG

Sequences:

>Translated_311_residues
MSFARETKEELAHIIPQKSCCQRAELGAYVKMLGDLGISNKKLKLSLKTPLSFLARKILILLKNNGFKTKTLVQDHGRLS
QKNFYYIEVEEHVDELLKEYGFIDEKGNLSNRINENYIKNDCCRRSFLRGVFLAGGSLNDPAGDYHLELNLPDEAFARQV
SKVLQKYHFTFRLLKRKTAPFLYLKDAEQILSFLSLIGAHQSLLKFENVRVVKEVRNQVNRLVNCETANIKKAVKTAVKQ
IKDIEYIAEKIGLDNLEPALKEIALLRLDNPDLSLKELGSLLTPPLTKSGVNHRFRKLELIAEKIRNGALG
>Mature_310_residues
SFARETKEELAHIIPQKSCCQRAELGAYVKMLGDLGISNKKLKLSLKTPLSFLARKILILLKNNGFKTKTLVQDHGRLSQ
KNFYYIEVEEHVDELLKEYGFIDEKGNLSNRINENYIKNDCCRRSFLRGVFLAGGSLNDPAGDYHLELNLPDEAFARQVS
KVLQKYHFTFRLLKRKTAPFLYLKDAEQILSFLSLIGAHQSLLKFENVRVVKEVRNQVNRLVNCETANIKKAVKTAVKQI
KDIEYIAEKIGLDNLEPALKEIALLRLDNPDLSLKELGSLLTPPLTKSGVNHRFRKLELIAEKIRNGALG

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_CARHZ (Q3AFD7)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_359147.1
- STRING:   Q3AFD7
- GeneID:   3727256
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0275
- NMPDR:   fig|246194.3.peg.286
- TIGR:   CHY_0275
- eggNOG:   COG1481
- HOGENOM:   HBG485718
- OMA:   ENFFELT
- BioCyc:   CHYD246194:CHY_0275-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 35436; Mature: 35305

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFARETKEELAHIIPQKSCCQRAELGAYVKMLGDLGISNKKLKLSLKTPLSFLARKILI
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHH
LLKNNGFKTKTLVQDHGRLSQKNFYYIEVEEHVDELLKEYGFIDEKGNLSNRINENYIKN
HHCCCCCCHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
DCCRRSFLRGVFLAGGSLNDPAGDYHLELNLPDEAFARQVSKVLQKYHFTFRLLKRKTAP
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FLYLKDAEQILSFLSLIGAHQSLLKFENVRVVKEVRNQVNRLVNCETANIKKAVKTAVKQ
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IKDIEYIAEKIGLDNLEPALKEIALLRLDNPDLSLKELGSLLTPPLTKSGVNHRFRKLEL
HHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
IAEKIRNGALG
HHHHHHCCCCC
>Mature Secondary Structure 
SFARETKEELAHIIPQKSCCQRAELGAYVKMLGDLGISNKKLKLSLKTPLSFLARKILI
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHH
LLKNNGFKTKTLVQDHGRLSQKNFYYIEVEEHVDELLKEYGFIDEKGNLSNRINENYIKN
HHCCCCCCHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
DCCRRSFLRGVFLAGGSLNDPAGDYHLELNLPDEAFARQVSKVLQKYHFTFRLLKRKTAP
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FLYLKDAEQILSFLSLIGAHQSLLKFENVRVVKEVRNQVNRLVNCETANIKKAVKTAVKQ
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IKDIEYIAEKIGLDNLEPALKEIALLRLDNPDLSLKELGSLLTPPLTKSGVNHRFRKLEL
HHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
IAEKIRNGALG
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA