BacMap

Definition	Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome.
Accession	NC_007503
Length	2,401,520

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The map label for this gene is yhdH [H]

Identifier: 78044612

GI number: 78044612

Start: 59035

End: 60396

Strand: Direct

Name: yhdH [H]

Synonym: CHY_0068

Alternate gene names: 78044612

Gene position: 59035-60396 (Clockwise)

Preceding gene: 78044497

Following gene: 78044032

Centisome position: 2.46

GC content: 38.4

Gene sequence:

>1362_bases
ATGGAAGGGAAAAAACGGGAAACTTTTTCTTCAAGCCTTGCGGTCTTTTTTGCAACATTGGGTTCCGCCATAGGCCTTGG
GAACATCTGGAGATTTCCCTACATTACCGGCATGAACGGTGGCGGCGGCTTTCTTTTAATCTACTTTTTATGTATTTTGT
TTGTGGGTATACCCATCATGATTAGTGAATTTTACATCGGAAGAAAAACTCGCAGTAACGCTGTAGGAGCTTTTAGAAAG
TTAAACCATTCCAACTTTAAATTTATAGGGCTGATGGGAGTTTTAGCAGCGTTTTTAATTATGTTTTTTTACAGCTCTGT
AGCAGGATGGGTTTATTCTTATGTTTTTAAAAGTATTATTGGCGAGTTTAACAATATAACCGTTGAAAAATCCAAAGAAC
TTTTTAACCTAACAATTTCTCATCCTTTTTATCCGATCCTTTGGCAGTTTGTTGTTCTTTTGGTTGTAGCCATAATCTTA
ATTTTTGGTGTGAAAAAAGGAATAGAACGGGTTACCAAAACCTTGATGCCGGTCTTATTTCTTTTAATTTTAATCATTGA
CATCCGGGCATTAACCTTAGATGGTGCCCGGGAAGGGGTTAACTTTTTAATTAACGTGGATTTTTCTAAAATAACCCGAG
ACAGTATTCTCATCGCCTTAGGCCTTGCTTTCTTTAAATTGTCCATAGGTATGGGCACGATGATCACTTACGGCAGTTAC
TTTACCAGGGAAAACAATATGCCTGCCACAGCGGCAAAAGTGGCCTTTTCCGATACCCTGGTATCCCTTTTAGCCGGTTT
GGCTATCTTTCCGGTAGTCTTTACCTTTAACATGGAGCCGGCAGCCGGACCGGGACTTTTGTTTATCACTATTCCTTTGG
TCTTTACTAAATTACCTTTGGGAACTGTTCTTTTAACTCTATTCTTTATCCTAACCTCAATTGCAGCCACTACGGCGATG
ATCTCCATGGTAGAAGTGCCGGTAGCTTATTTTGCCGAAGAAAAAGGTATGGAGAGAAAGAAAGCGGTGCTTTTAACTAC
CGCAATAATATTTGTCTTTGGGGTATTTGCTACTTTATCCCTGGGTGGAAGCCCGGTAATAAGCAACTTTAAATTATTTG
GTAAAAACATCTTTGATTTATTTGATTATGTATCTTCAAACATCCTTTTACCCCTTGGTGGCTTATTTATTGCAATTTTT
GTTGGCTATTTTGTAAAAAAAGAAGATTTATACCAGGAACTCGGTAACTTTGGCTTAATAAACAACCAGCGGATTATCGA
TGTCTTCTATCTTATTGTAAGATACGTAACCCCAATCCTGGTTATTGTAATCTTTTTAAATTCCCTGGGGCTTTTGGGGT
AG

Upstream 100 bases:

>100_bases
AAATTATAAGGTTTTATGTAGAATTATGCACGGTTTGACCGCCCAAATATTAATGGGCGTTTTCTTTTTTATTAAAATTT
ATGGCAGTAGGAGGAGCAGT

Downstream 100 bases:

>100_bases
GGTAGTATCGTAGCTAAAGCGGTGGAGAGAAGTTTAGACATTTACTTATATGCGTTAGGAGTAAAAGAAAACTAAACCAA
AAAGGAGAATGCCCTTTGGA

Product: sodium transporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MEGKKRETFSSSLAVFFATLGSAIGLGNIWRFPYITGMNGGGGFLLIYFLCILFVGIPIMISEFYIGRKTRSNAVGAFRK
LNHSNFKFIGLMGVLAAFLIMFFYSSVAGWVYSYVFKSIIGEFNNITVEKSKELFNLTISHPFYPILWQFVVLLVVAIIL
IFGVKKGIERVTKTLMPVLFLLILIIDIRALTLDGAREGVNFLINVDFSKITRDSILIALGLAFFKLSIGMGTMITYGSY
FTRENNMPATAAKVAFSDTLVSLLAGLAIFPVVFTFNMEPAAGPGLLFITIPLVFTKLPLGTVLLTLFFILTSIAATTAM
ISMVEVPVAYFAEEKGMERKKAVLLTTAIIFVFGVFATLSLGGSPVISNFKLFGKNIFDLFDYVSSNILLPLGGLFIAIF
VGYFVKKEDLYQELGNFGLINNQRIIDVFYLIVRYVTPILVIVIFLNSLGLLG

Sequences:

>Translated_453_residues
MEGKKRETFSSSLAVFFATLGSAIGLGNIWRFPYITGMNGGGGFLLIYFLCILFVGIPIMISEFYIGRKTRSNAVGAFRK
LNHSNFKFIGLMGVLAAFLIMFFYSSVAGWVYSYVFKSIIGEFNNITVEKSKELFNLTISHPFYPILWQFVVLLVVAIIL
IFGVKKGIERVTKTLMPVLFLLILIIDIRALTLDGAREGVNFLINVDFSKITRDSILIALGLAFFKLSIGMGTMITYGSY
FTRENNMPATAAKVAFSDTLVSLLAGLAIFPVVFTFNMEPAAGPGLLFITIPLVFTKLPLGTVLLTLFFILTSIAATTAM
ISMVEVPVAYFAEEKGMERKKAVLLTTAIIFVFGVFATLSLGGSPVISNFKLFGKNIFDLFDYVSSNILLPLGGLFIAIF
VGYFVKKEDLYQELGNFGLINNQRIIDVFYLIVRYVTPILVIVIFLNSLGLLG
>Mature_453_residues
MEGKKRETFSSSLAVFFATLGSAIGLGNIWRFPYITGMNGGGGFLLIYFLCILFVGIPIMISEFYIGRKTRSNAVGAFRK
LNHSNFKFIGLMGVLAAFLIMFFYSSVAGWVYSYVFKSIIGEFNNITVEKSKELFNLTISHPFYPILWQFVVLLVVAIIL
IFGVKKGIERVTKTLMPVLFLLILIIDIRALTLDGAREGVNFLINVDFSKITRDSILIALGLAFFKLSIGMGTMITYGSY
FTRENNMPATAAKVAFSDTLVSLLAGLAIFPVVFTFNMEPAAGPGLLFITIPLVFTKLPLGTVLLTLFFILTSIAATTAM
ISMVEVPVAYFAEEKGMERKKAVLLTTAIIFVFGVFATLSLGGSPVISNFKLFGKNIFDLFDYVSSNILLPLGGLFIAIF
VGYFVKKEDLYQELGNFGLINNQRIIDVFYLIVRYVTPILVIVIFLNSLGLLG

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI188528618, Length=488, Percent_Identity=26.6393442622951, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI4507041, Length=507, Percent_Identity=25.6410256410256, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI171184408, Length=502, Percent_Identity=25.8964143426295, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI171184406, Length=502, Percent_Identity=25.8964143426295, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI171184404, Length=502, Percent_Identity=25.8964143426295, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI4507043, Length=425, Percent_Identity=26.1176470588235, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI21361581, Length=500, Percent_Identity=24.4, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI289191351, Length=404, Percent_Identity=25, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI4557046, Length=404, Percent_Identity=25, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI289191377, Length=404, Percent_Identity=25, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI51468073, Length=301, Percent_Identity=25.9136212624585, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI134304856, Length=350, Percent_Identity=27.7142857142857, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI194018524, Length=300, Percent_Identity=29.3333333333333, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI197276623, Length=507, Percent_Identity=25.0493096646943, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI54607094, Length=507, Percent_Identity=25.0493096646943, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI92859670, Length=443, Percent_Identity=25.9593679458239, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI7657587, Length=500, Percent_Identity=24.8, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI33354281, Length=305, Percent_Identity=25.9016393442623, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI11181770, Length=308, Percent_Identity=26.6233766233766, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI58219014, Length=304, Percent_Identity=26.9736842105263, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI5032097, Length=504, Percent_Identity=24.4047619047619, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI67782317, Length=426, Percent_Identity=26.056338028169, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI67782313, Length=426, Percent_Identity=26.056338028169, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI67782315, Length=426, Percent_Identity=26.056338028169, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI218563756, Length=506, Percent_Identity=24.1106719367589, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI12408638, Length=286, Percent_Identity=24.4755244755245, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI21361693, Length=207, Percent_Identity=25.1207729468599, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI300360519, Length=324, Percent_Identity=24.0740740740741, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI197276625, Length=123, Percent_Identity=34.9593495934959, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI289191353, Length=219, Percent_Identity=26.4840182648402, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI6005715, Length=135, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17554804, Length=479, Percent_Identity=26.0960334029228, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI133952791, Length=424, Percent_Identity=27.3584905660377, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17555248, Length=375, Percent_Identity=27.7333333333333, Blast_Score=118, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI25146584, Length=379, Percent_Identity=25.3298153034301, Blast_Score=115, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71995588, Length=498, Percent_Identity=23.6947791164659, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17569475, Length=412, Percent_Identity=25.2427184466019, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71998244, Length=358, Percent_Identity=25.6983240223464, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17535731, Length=122, Percent_Identity=34.4262295081967, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17542050, Length=117, Percent_Identity=34.1880341880342, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI212642127, Length=115, Percent_Identity=30.4347826086957, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17136952, Length=367, Percent_Identity=27.5204359673025, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI281364394, Length=367, Percent_Identity=27.7929155313352, Blast_Score=126, Evalue=4e-29,
Organism=Drosophila melanogaster, GI28574704, Length=367, Percent_Identity=27.7929155313352, Blast_Score=126, Evalue=4e-29,
Organism=Drosophila melanogaster, GI17136950, Length=367, Percent_Identity=27.7929155313352, Blast_Score=126, Evalue=4e-29,
Organism=Drosophila melanogaster, GI28574702, Length=367, Percent_Identity=27.7929155313352, Blast_Score=126, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24762620, Length=498, Percent_Identity=24.8995983935743, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI45551183, Length=453, Percent_Identity=26.4900662251656, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI45550877, Length=405, Percent_Identity=27.9012345679012, Blast_Score=122, Evalue=6e-28,
Organism=Drosophila melanogaster, GI24639516, Length=296, Percent_Identity=25.3378378378378, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=27.2727272727273, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24639514, Length=296, Percent_Identity=25.3378378378378, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI221329674, Length=296, Percent_Identity=25.3378378378378, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI19921936, Length=408, Percent_Identity=25.2450980392157, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24582567, Length=432, Percent_Identity=23.6111111111111, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24661428, Length=503, Percent_Identity=24.8508946322068, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI281363702, Length=368, Percent_Identity=27.7173913043478, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281363700, Length=337, Percent_Identity=28.1899109792285, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI281365034, Length=437, Percent_Identity=23.1121281464531, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281364136, Length=377, Percent_Identity=24.6684350132626, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI45551088, Length=381, Percent_Identity=24.6719160104987, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24652942, Length=381, Percent_Identity=24.6719160104987, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19921352, Length=443, Percent_Identity=22.5733634311512, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24584353, Length=443, Percent_Identity=22.5733634311512, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24639853, Length=522, Percent_Identity=23.5632183908046, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24654186, Length=140, Percent_Identity=32.1428571428571, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24582569, Length=391, Percent_Identity=21.9948849104859, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 50071; Mature: 50071

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3 ; PS00267 TACHYKININ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGKKRETFSSSLAVFFATLGSAIGLGNIWRFPYITGMNGGGGFLLIYFLCILFVGIPIM
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCEEECCCCCCHHHHHHHHHHHHHHHHHH
ISEFYIGRKTRSNAVGAFRKLNHSNFKFIGLMGVLAAFLIMFFYSSVAGWVYSYVFKSII
HHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEFNNITVEKSKELFNLTISHPFYPILWQFVVLLVVAIILIFGVKKGIERVTKTLMPVLF
CCCCCEEHCCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLILIIDIRALTLDGAREGVNFLINVDFSKITRDSILIALGLAFFKLSIGMGTMITYGSY
HHHHHHHHHHHEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCH
FTRENNMPATAAKVAFSDTLVSLLAGLAIFPVVFTFNMEPAAGPGLLFITIPLVFTKLPL
HEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEHHHHHHHHCCH
GTVLLTLFFILTSIAATTAMISMVEVPVAYFAEEKGMERKKAVLLTTAIIFVFGVFATLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LGGSPVISNFKLFGKNIFDLFDYVSSNILLPLGGLFIAIFVGYFVKKEDLYQELGNFGLI
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NNQRIIDVFYLIVRYVTPILVIVIFLNSLGLLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEGKKRETFSSSLAVFFATLGSAIGLGNIWRFPYITGMNGGGGFLLIYFLCILFVGIPIM
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCEEECCCCCCHHHHHHHHHHHHHHHHHH
ISEFYIGRKTRSNAVGAFRKLNHSNFKFIGLMGVLAAFLIMFFYSSVAGWVYSYVFKSII
HHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEFNNITVEKSKELFNLTISHPFYPILWQFVVLLVVAIILIFGVKKGIERVTKTLMPVLF
CCCCCEEHCCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLILIIDIRALTLDGAREGVNFLINVDFSKITRDSILIALGLAFFKLSIGMGTMITYGSY
HHHHHHHHHHHEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCH
FTRENNMPATAAKVAFSDTLVSLLAGLAIFPVVFTFNMEPAAGPGLLFITIPLVFTKLPL
HEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEHHHHHHHHCCH
GTVLLTLFFILTSIAATTAMISMVEVPVAYFAEEKGMERKKAVLLTTAIIFVFGVFATLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LGGSPVISNFKLFGKNIFDLFDYVSSNILLPLGGLFIAIFVGYFVKKEDLYQELGNFGLI
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NNQRIIDVFYLIVRYVTPILVIVIFLNSLGLLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]