| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is rpoN [H]
Identifier: 78044494
GI number: 78044494
Start: 244471
End: 245850
Strand: Direct
Name: rpoN [H]
Synonym: CHY_0279
Alternate gene names: 78044494
Gene position: 244471-245850 (Clockwise)
Preceding gene: 78045229
Following gene: 78043763
Centisome position: 10.18
GC content: 40.22
Gene sequence:
>1380_bases ATGCCGATGGATTTTGGACTGAATTTAGAACAGACGCAAAAGCTTGTTTTAACGCCCGAGCTAAAACAGGCCATTACCAT TTTACAATTGAATACTTTAGAATTAGTAAGTTTTATTGAACAGCAGGTGGAAACCAATCCGCTTTTAGAAATTGAAATTT GTGAAGATAAAGAGGAAAATGAATTGGGCGAAAATGAAGAATATCAGGAATTGCGGGAAATTGCTGAATATTTTGCCGAT TCCAGTGATTTGGGGATGGGCTTGAGGCAAGAGGATGAAGAACGGAAAGGTTTTGAACCGGCAAGTTCCGAAAGCAGCCT GTGGGAACATCTTTATTTACAACTTCATTTATTGAATTTACCCCAGCTTGATAATAAAATCGGAGAGTTTATTATTGGCA ATATTGACGAAAATGGCTATCTAACCTGCCCGGTGGAGGAAATTTCTGAAAGGCTGAAAGTGGAAGAAGAAGAAGTGGTA CGGGTTTTAAAAATTATCCAAACCTTTGATCCTCCAGGAGTTGGCGCCCGGGGGCTTTTAGAATGTCTTTTAATTCAGGC GGAGCAAAAAAATATTTTAACTCCTTTGTTAAAAGAGATAATTTCCAATTATTTACCCGATTTAGCCCAGAGCAAGTACT TGAAAGTGGCCAATCGCTTGGGAGTAACGGTAGAGGAAGTTTACCAGGCGATGGATATAATAAAAAGTTTAGACCCAAAG CCGGGAAGAAATTTTGCTACGCTAAAAGAAGTAAGGTACGTGGTACCGGATATCACTGTGGAAAAAGTGGAAAGTGAATA TATAATCCTGGTTAACGACAGCCTTTTACCCCGTTTAAATATTAATAAAATTTACCAAAACATTTTAAAACAAAAGGATT ACGATGAAAAAACGAAAAAATATGTGGAGAAAAAATTAAATCAAGCCCTCTGGCTTATCAAAAGTATCGAACAGAGGCGT TTTACCCTGTACCGGGTGGCTCGTTTCATTGTGGACTATCAACGGGAATTTTTAGAGTACGGTTTAAAATATTTAAAGCC GTTAACCCTAAAACAGGTGGCAAAGGCGTTGAATTTACACGAATCGACCATCTCCCGGGCCTGCGCCAATAAATATATGG CTACTCCCCGGGGGACTTTTGAAATGAAGTACTTCTTTGCTTCGGCGTTGGAAAGCGGTCAAGGAGGTTTTTCCTCTTCC ACCAGTATCAAAGCGCAAATTAAAGAACTGATTGCCCGGGAAAATCCCCAGGATCCTTTATCGGACCAGAGAATTGCCGA TATTTTAACCCAGCGGGGTGTAAAAATATCCCGACGGACCGTTGCTAAATACCGGGAAGAAATGGGGATTTTAGCGGCAG CAAAACGGAGAAAAGTGTAG
Upstream 100 bases:
>100_bases TATTTTAAAAAGTTGGTTCATATAAATTAACAAGAAGGATAATCTTAAGCTTTGGGCGAATTATTTACATAAAGGTTTTC TTCTTAGGAGTGAATGACGA
Downstream 100 bases:
>100_bases AAATTCCGGCGGGCACAAGCCCGTCTTAGTACGGGGAATTTTTAGCGCCCAAGTTTGCCAAATTCCCAAAACTTCTACCG GAAAGATTGCCAAAGTGCAG
Product: RNA polymerase sigma-54 factor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MPMDFGLNLEQTQKLVLTPELKQAITILQLNTLELVSFIEQQVETNPLLEIEICEDKEENELGENEEYQELREIAEYFAD SSDLGMGLRQEDEERKGFEPASSESSLWEHLYLQLHLLNLPQLDNKIGEFIIGNIDENGYLTCPVEEISERLKVEEEEVV RVLKIIQTFDPPGVGARGLLECLLIQAEQKNILTPLLKEIISNYLPDLAQSKYLKVANRLGVTVEEVYQAMDIIKSLDPK PGRNFATLKEVRYVVPDITVEKVESEYIILVNDSLLPRLNINKIYQNILKQKDYDEKTKKYVEKKLNQALWLIKSIEQRR FTLYRVARFIVDYQREFLEYGLKYLKPLTLKQVAKALNLHESTISRACANKYMATPRGTFEMKYFFASALESGQGGFSSS TSIKAQIKELIARENPQDPLSDQRIADILTQRGVKISRRTVAKYREEMGILAAAKRRKV
Sequences:
>Translated_459_residues MPMDFGLNLEQTQKLVLTPELKQAITILQLNTLELVSFIEQQVETNPLLEIEICEDKEENELGENEEYQELREIAEYFAD SSDLGMGLRQEDEERKGFEPASSESSLWEHLYLQLHLLNLPQLDNKIGEFIIGNIDENGYLTCPVEEISERLKVEEEEVV RVLKIIQTFDPPGVGARGLLECLLIQAEQKNILTPLLKEIISNYLPDLAQSKYLKVANRLGVTVEEVYQAMDIIKSLDPK PGRNFATLKEVRYVVPDITVEKVESEYIILVNDSLLPRLNINKIYQNILKQKDYDEKTKKYVEKKLNQALWLIKSIEQRR FTLYRVARFIVDYQREFLEYGLKYLKPLTLKQVAKALNLHESTISRACANKYMATPRGTFEMKYFFASALESGQGGFSSS TSIKAQIKELIARENPQDPLSDQRIADILTQRGVKISRRTVAKYREEMGILAAAKRRKV >Mature_458_residues PMDFGLNLEQTQKLVLTPELKQAITILQLNTLELVSFIEQQVETNPLLEIEICEDKEENELGENEEYQELREIAEYFADS SDLGMGLRQEDEERKGFEPASSESSLWEHLYLQLHLLNLPQLDNKIGEFIIGNIDENGYLTCPVEEISERLKVEEEEVVR VLKIIQTFDPPGVGARGLLECLLIQAEQKNILTPLLKEIISNYLPDLAQSKYLKVANRLGVTVEEVYQAMDIIKSLDPKP GRNFATLKEVRYVVPDITVEKVESEYIILVNDSLLPRLNINKIYQNILKQKDYDEKTKKYVEKKLNQALWLIKSIEQRRF TLYRVARFIVDYQREFLEYGLKYLKPLTLKQVAKALNLHESTISRACANKYMATPRGTFEMKYFFASALESGQGGFSSST SIKAQIKELIARENPQDPLSDQRIADILTQRGVKISRRTVAKYREEMGILAAAKRRKV
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=479, Percent_Identity=38.6221294363257, Blast_Score=317, Evalue=1e-87,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 52861; Mature: 52729
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMDFGLNLEQTQKLVLTPELKQAITILQLNTLELVSFIEQQVETNPLLEIEICEDKEEN CCCCCCCCHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC ELGENEEYQELREIAEYFADSSDLGMGLRQEDEERKGFEPASSESSLWEHLYLQLHLLNL CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCC PQLDNKIGEFIIGNIDENGYLTCPVEEISERLKVEEEEVVRVLKIIQTFDPPGVGARGLL CHHHHHHHHHEEECCCCCCEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH ECLLIQAEQKNILTPLLKEIISNYLPDLAQSKYLKVANRLGVTVEEVYQAMDIIKSLDPK HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC PGRNFATLKEVRYVVPDITVEKVESEYIILVNDSLLPRLNINKIYQNILKQKDYDEKTKK CCCCHHHHHHHHHHCCCCHHEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHH YVEKKLNQALWLIKSIEQRRFTLYRVARFIVDYQREFLEYGLKYLKPLTLKQVAKALNLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ESTISRACANKYMATPRGTFEMKYFFASALESGQGGFSSSTSIKAQIKELIARENPQDPL HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC SDQRIADILTQRGVKISRRTVAKYREEMGILAAAKRRKV CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PMDFGLNLEQTQKLVLTPELKQAITILQLNTLELVSFIEQQVETNPLLEIEICEDKEEN CCCCCCCHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC ELGENEEYQELREIAEYFADSSDLGMGLRQEDEERKGFEPASSESSLWEHLYLQLHLLNL CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCC PQLDNKIGEFIIGNIDENGYLTCPVEEISERLKVEEEEVVRVLKIIQTFDPPGVGARGLL CHHHHHHHHHEEECCCCCCEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH ECLLIQAEQKNILTPLLKEIISNYLPDLAQSKYLKVANRLGVTVEEVYQAMDIIKSLDPK HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC PGRNFATLKEVRYVVPDITVEKVESEYIILVNDSLLPRLNINKIYQNILKQKDYDEKTKK CCCCHHHHHHHHHHCCCCHHEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHH YVEKKLNQALWLIKSIEQRRFTLYRVARFIVDYQREFLEYGLKYLKPLTLKQVAKALNLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ESTISRACANKYMATPRGTFEMKYFFASALESGQGGFSSSTSIKAQIKELIARENPQDPL HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC SDQRIADILTQRGVKISRRTVAKYREEMGILAAAKRRKV CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8550525 [H]