Click here to switch to the map view.

The map label for this gene is ybbM [H]

Identifier: 78044391

GI number: 78044391

Start: 100120

End: 100866

Strand: Direct

Name: ybbM [H]

Synonym: CHY_0118

Alternate gene names: 78044391

Gene position: 100120-100866 (Clockwise)

Preceding gene: 78044335

Following gene: 78045189

Centisome position: 4.17

GC content: 45.92

Gene sequence:

>747_bases
TTGAGCAACTGGTCGCTTCTTTTAAGCTTTAGTTTGGTTATTCTGGCAATGCTTGTTTCCAAAAAAGAGAAACTTTTGTT
AGAAAAAGATCTTTTAGTGGGAAGTATCCGGGCAGTGGTGCAGTTGGTAGCGGTAGGATATATCTTAAAATTTATCTTTG
CCCGGAATAATTTCTGGTTTACTACGGCCCTTTTACTGGTAATGGTTTTAAATGCGGCTTATATAGCCGGTAAAAGGGGT
GAAGGGATTAAAAATAGCCATCTTATCTCCTTTGGGGCAATCGTGATGGGACTCATCATTACCCTGGGGGCTCTGATTGC
TTTTCGGGCTATTTCCTATAAGCCCAGCCAGGCCATTCCGGTAAGCGGAATGATTGTGGGAAATGCGATGGTGGCGGTGG
GACTGGTGTTTCGAAGCTTAAAACAAACTTTTCGCGACCGGCGGGAAGAGGTAGAGGTAAAATTAAGCCTGGGTGCTCCT
CCCCGGGAAGCGGCTTTTTCCCTTATCCGCGAAAGTATTAAAACGGCAATGCTTCCCACCGTAGACCAGATGAAAACTCT
GGGAATCGTTCAGCTGCCGGGAATGATGACCGGTTTAATCTTAGCCGGGGCGAATCCGCTTATGGCGATTAAATACCAGA
TTATGGTGGCGTTTATGCTGGCAGGGGCGGTAACGGTGGCGGCTTATGTGGCAAGCTATTTTGCTTACCGGGGATTTTTT
AATGAAGATTTCCAGATCGTAAGTTAA

Upstream 100 bases:

>100_bases
TTACAGTGTTAGCGATTACCCATAATCTTGAGGCGTTTAACTTTACAAAGGTGCTGTACCTTGATGCTGGAAAGGTAAAA
TATTTTGGGGAGGGAAAAAT

Downstream 100 bases:

>100_bases
AGCCCTAAAATTTCGACAAAAAATTATCAATTTTGACAGAAAAGTTTATAGAAAATAATTTTAAAATAGTTTAAAATAGT
AAGAAATTTAACTAAATCTT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSNWSLLLSFSLVILAMLVSKKEKLLLEKDLLVGSIRAVVQLVAVGYILKFIFARNNFWFTTALLLVMVLNAAYIAGKRG
EGIKNSHLISFGAIVMGLIITLGALIAFRAISYKPSQAIPVSGMIVGNAMVAVGLVFRSLKQTFRDRREEVEVKLSLGAP
PREAAFSLIRESIKTAMLPTVDQMKTLGIVQLPGMMTGLILAGANPLMAIKYQIMVAFMLAGAVTVAAYVASYFAYRGFF
NEDFQIVS

Sequences:

>Translated_248_residues
MSNWSLLLSFSLVILAMLVSKKEKLLLEKDLLVGSIRAVVQLVAVGYILKFIFARNNFWFTTALLLVMVLNAAYIAGKRG
EGIKNSHLISFGAIVMGLIITLGALIAFRAISYKPSQAIPVSGMIVGNAMVAVGLVFRSLKQTFRDRREEVEVKLSLGAP
PREAAFSLIRESIKTAMLPTVDQMKTLGIVQLPGMMTGLILAGANPLMAIKYQIMVAFMLAGAVTVAAYVASYFAYRGFF
NEDFQIVS
>Mature_247_residues
SNWSLLLSFSLVILAMLVSKKEKLLLEKDLLVGSIRAVVQLVAVGYILKFIFARNNFWFTTALLLVMVLNAAYIAGKRGE
GIKNSHLISFGAIVMGLIITLGALIAFRAISYKPSQAIPVSGMIVGNAMVAVGLVFRSLKQTFRDRREEVEVKLSLGAPP
REAAFSLIRESIKTAMLPTVDQMKTLGIVQLPGMMTGLILAGANPLMAIKYQIMVAFMLAGAVTVAAYVASYFAYRGFFN
EDFQIVS

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=247, Percent_Identity=48.1781376518219, Blast_Score=233, Evalue=8e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 27048; Mature: 26917

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCEECC
>Mature Secondary Structure 
SNWSLLLSFSLVILAMLVSKKEKLLLEKDLLVGSIRAVVQLVAVGYILKFIFARNNFWF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TTALLLVMVLNAAYIAGKRGEGIKNSHLISFGAIVMGLIITLGALIAFRAISYKPSQAIP
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VSGMIVGNAMVAVGLVFRSLKQTFRDRREEVEVKLSLGAPPREAAFSLIRESIKTAMLPT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
VDQMKTLGIVQLPGMMTGLILAGANPLMAIKYQIMVAFMLAGAVTVAAYVASYFAYRGFF
HHHHHHCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NEDFQIVS
CCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]