| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is ppdK [H]
Identifier: 78044221
GI number: 78044221
Start: 387697
End: 390354
Strand: Direct
Name: ppdK [H]
Synonym: CHY_0443
Alternate gene names: 78044221
Gene position: 387697-390354 (Clockwise)
Preceding gene: 78044534
Following gene: 78043254
Centisome position: 16.14
GC content: 47.33
Gene sequence:
>2658_bases ATGACCAAATACGTTTACTTATTTCATGAAGGCCGCGCTGACATGAAAGATTTATTGGGGGGAAAAGGGGCCAATTTAGC GGAAATGACCAATATCGGTCTTCCGGTACCTCCGGGAATGACCATTACTACCGAAGCCTGTCGGGAGTATTACCGGCTGG GAGGTAAGTTCCCGGAAGGTTTAATGGAAGAGGTCAAGGAAAAGCTTGTTTATATTGAAGAAAAAACCGGTAAAAAATTT GGCGACCCCCAAAACCCTCTTTTAGTTTCGGTGCGGTCGGGAGCTAAATTCTCGATGCCGGGAATGATGGATACTATCTT AAACCTCGGTTTAAACGAGGAAACGGTGGAAGGTTTGGCGCAAAACACTCAAAATCCCCGGTTTGCTTATGATGCTTACC GGCGGTTTATTCAGATGTTTGGGGATGTGGTTTTAGAAATTCCCAAACACGAGTTTGAACATATTTTAGACCGGCAAAAA GAAAAGGAAGGGGTAACCTTTGACCAGGAACTTTCCGCAGAAGCTTTAAAGGAAGTTATTACCCGATATAAAGAATTGGT AGAAAGAAAAACTGGAAAGCCTTTCCCTTCTGATCCCATGGTTCAGCTTACCATGGCTATTGAAGCGGTATTTAAGTCCT GGAATAACGACCGGGCCATTGTCTACCGGAATTTAAATAAAATTCCCCATGATTTGGGTACTGCGGTTAACATCCAGTCA ATGGTCTTTGGTAATATGGGCAACGACTCCGGTACCGGTGTGGCCTTTACCCGGAACCCTTCCACCGGGGAAAAGGTTTT ATACGGTGAATATCTGACCAACGCTCAAGGAGAAGATGTGGTTGCCGGCATTCGTACTCCGAGTCCCATTTCCAAGTTAA AAGAAGAAATGCCGGAAGTTTACGAACAATTTGTCAGTATTGCTAAACTCTTAGAAAGTCACTACAAAAACATGCAGGAC ATTGAATTTACCATTGAGCGGGGTAAACTTTATATCCTGCAAACCAGAAACGGCAAGCGGACGGCCCAGGCTGCAGTTAA GATTGCCCATGACATGGTCGAAGAAGGGTTAATTACCAAAAAAGAAGCGATTTTAATGGTGGAGCCGGGACAATTAGACC AGCTTCTTCACCGGCAAATTGATCCTTCGGCCAAGGTGGAGGTAATTGCCAAGGGGTTACCCGCTTCTCCCGGGGCTGCC TCGGGGATTGTAGTTTTTGATGCCGATGAAGCGGAGAAACTGGGCAAAGAAGGGAAAAAGGTTTTACTGGTGCGGACCGA AACCACTCCCGATGATATCCACGGCATTGTGGCCGCCCAGGGAGTTTTAACCAGCCGGGGTGGTATGACCAGCCATGCGG CGGTGGTTGCCCGGGGCATGGGTAAGCCGTGTGTTTGCGGTTGTGAAGCCATCAAAATTGATTATGAGAAAAAATTGTTT ACCGTAGACAATATTACCGTAAAAGAAGGAGACTACTTATCCATTGACGGTTCTACCGGACGGGTAATTCTCGGAACTGT CCCGATGAAAGATCCAGAACTATCTCCGGAATTTATTAAGCTTCTGGAATGGGCCGATGAGTTAAAGCGGCTTGAGGTTC GGGCCAATGCCGATACCCCGGAAGACGCCCAGAAAGCCCGGGAATTTGGAGCCAAAGGTATCGGCCTTTGCCGGACGGAA CATATGTTTATGGGCCCCGAGCGGCTGCCTCACGTACAAAGAATGATTTTAGCCGAAACCAAAGAAGAGCGGGAAGAGGC TCTATCTCACCTTCTTCCCATGCAGGAAGAGGATTTCTATGGCATTTTAAAAGCTATGGAAGGCTATCCGGTATGTATCC GGCTCCTGGACCCGCCCCTTCATGAATTTTTGCCAAGTTTAGAAGAACTGTTGGTGGAAACTACCGAGCTCAGGGTGCGG GGAGATAATCCAGAATTACTTGCCGAAAAAGAAGCTCTTTTAAAGAAAGTAAAATCTTTACACGAATTTAACCCGATGCT CGGACACCGGGGCTGCCGTTTGGGGATTACTTATCCGGAAGTTTACGAAATGCAGATTCGGGCCATCTTTAACGCTGCTG CTCGCTTAACCAAAGAAGGGTATAAAGTATATCCTGAGGTGGAAATTCCCTTAACCATTGATGTTAACGAAATGAAATTC TTTAAAGAAAGAATTGATGCCATTGCCCGGGAGGTAATGGAAAGGGAAGGGGTTACCTTCCACTACACCACCGGCACCAT GATTGAATTACCAAGGGCAGCGCTACTGGCCGATGAACTGGCCGAAGTTGCCGAATTCTTTAGCTTTGGTACTAACGACC TAACCCAGACTACCCTTGGTTTTAGCCGGGACGACGCCGAAGGGAAGTTTTTAACCCACTACTTAGATATGAAGATTTTA AAGGAAAATCCCTTTATCGTCTTGGACCGCAAAGGTGTTGGGAAATTAATGAAAATTGCCGTAGAAGGCGGCCGGAAAAC CCGTCCGGATTTACTGGTCGGTATCTGCGGTGAGCACGGCGGCGAACCAAGCTCCGTAGAATTCTGCCACCAGATTGGGC TTGACTTTGTAAGCTGTTCACCTTACCGGGTGCCGATTGCCCGCCTGGCAGCAGCTCAGGCGGCGGTGGCGGAAGGAGAA ATTGTTGGAACTAAATAA
Upstream 100 bases:
>100_bases TGAAAAAAATCGGCTGTGCCGTAATTGATGTGAGTAATAAAGCGGTGGAGGAAACGGCAGCCAGGGTGTTAGAAATTTAC AGGAAAGGGGTAGGGAGGTA
Downstream 100 bases:
>100_bases GGAAATTTAAAAATAAAGGGGCTACCGCAAAAAAATAAATGGGTAGCCCCTTATTTAATGTTTTGGAACTTTTTTGTTCT AATCCTCTCTAATCTAATAT
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 885; Mature: 884
Protein sequence:
>885_residues MTKYVYLFHEGRADMKDLLGGKGANLAEMTNIGLPVPPGMTITTEACREYYRLGGKFPEGLMEEVKEKLVYIEEKTGKKF GDPQNPLLVSVRSGAKFSMPGMMDTILNLGLNEETVEGLAQNTQNPRFAYDAYRRFIQMFGDVVLEIPKHEFEHILDRQK EKEGVTFDQELSAEALKEVITRYKELVERKTGKPFPSDPMVQLTMAIEAVFKSWNNDRAIVYRNLNKIPHDLGTAVNIQS MVFGNMGNDSGTGVAFTRNPSTGEKVLYGEYLTNAQGEDVVAGIRTPSPISKLKEEMPEVYEQFVSIAKLLESHYKNMQD IEFTIERGKLYILQTRNGKRTAQAAVKIAHDMVEEGLITKKEAILMVEPGQLDQLLHRQIDPSAKVEVIAKGLPASPGAA SGIVVFDADEAEKLGKEGKKVLLVRTETTPDDIHGIVAAQGVLTSRGGMTSHAAVVARGMGKPCVCGCEAIKIDYEKKLF TVDNITVKEGDYLSIDGSTGRVILGTVPMKDPELSPEFIKLLEWADELKRLEVRANADTPEDAQKAREFGAKGIGLCRTE HMFMGPERLPHVQRMILAETKEEREEALSHLLPMQEEDFYGILKAMEGYPVCIRLLDPPLHEFLPSLEELLVETTELRVR GDNPELLAEKEALLKKVKSLHEFNPMLGHRGCRLGITYPEVYEMQIRAIFNAAARLTKEGYKVYPEVEIPLTIDVNEMKF FKERIDAIAREVMEREGVTFHYTTGTMIELPRAALLADELAEVAEFFSFGTNDLTQTTLGFSRDDAEGKFLTHYLDMKIL KENPFIVLDRKGVGKLMKIAVEGGRKTRPDLLVGICGEHGGEPSSVEFCHQIGLDFVSCSPYRVPIARLAAAQAAVAEGE IVGTK
Sequences:
>Translated_885_residues MTKYVYLFHEGRADMKDLLGGKGANLAEMTNIGLPVPPGMTITTEACREYYRLGGKFPEGLMEEVKEKLVYIEEKTGKKF GDPQNPLLVSVRSGAKFSMPGMMDTILNLGLNEETVEGLAQNTQNPRFAYDAYRRFIQMFGDVVLEIPKHEFEHILDRQK EKEGVTFDQELSAEALKEVITRYKELVERKTGKPFPSDPMVQLTMAIEAVFKSWNNDRAIVYRNLNKIPHDLGTAVNIQS MVFGNMGNDSGTGVAFTRNPSTGEKVLYGEYLTNAQGEDVVAGIRTPSPISKLKEEMPEVYEQFVSIAKLLESHYKNMQD IEFTIERGKLYILQTRNGKRTAQAAVKIAHDMVEEGLITKKEAILMVEPGQLDQLLHRQIDPSAKVEVIAKGLPASPGAA SGIVVFDADEAEKLGKEGKKVLLVRTETTPDDIHGIVAAQGVLTSRGGMTSHAAVVARGMGKPCVCGCEAIKIDYEKKLF TVDNITVKEGDYLSIDGSTGRVILGTVPMKDPELSPEFIKLLEWADELKRLEVRANADTPEDAQKAREFGAKGIGLCRTE HMFMGPERLPHVQRMILAETKEEREEALSHLLPMQEEDFYGILKAMEGYPVCIRLLDPPLHEFLPSLEELLVETTELRVR GDNPELLAEKEALLKKVKSLHEFNPMLGHRGCRLGITYPEVYEMQIRAIFNAAARLTKEGYKVYPEVEIPLTIDVNEMKF FKERIDAIAREVMEREGVTFHYTTGTMIELPRAALLADELAEVAEFFSFGTNDLTQTTLGFSRDDAEGKFLTHYLDMKIL KENPFIVLDRKGVGKLMKIAVEGGRKTRPDLLVGICGEHGGEPSSVEFCHQIGLDFVSCSPYRVPIARLAAAQAAVAEGE IVGTK >Mature_884_residues TKYVYLFHEGRADMKDLLGGKGANLAEMTNIGLPVPPGMTITTEACREYYRLGGKFPEGLMEEVKEKLVYIEEKTGKKFG DPQNPLLVSVRSGAKFSMPGMMDTILNLGLNEETVEGLAQNTQNPRFAYDAYRRFIQMFGDVVLEIPKHEFEHILDRQKE KEGVTFDQELSAEALKEVITRYKELVERKTGKPFPSDPMVQLTMAIEAVFKSWNNDRAIVYRNLNKIPHDLGTAVNIQSM VFGNMGNDSGTGVAFTRNPSTGEKVLYGEYLTNAQGEDVVAGIRTPSPISKLKEEMPEVYEQFVSIAKLLESHYKNMQDI EFTIERGKLYILQTRNGKRTAQAAVKIAHDMVEEGLITKKEAILMVEPGQLDQLLHRQIDPSAKVEVIAKGLPASPGAAS GIVVFDADEAEKLGKEGKKVLLVRTETTPDDIHGIVAAQGVLTSRGGMTSHAAVVARGMGKPCVCGCEAIKIDYEKKLFT VDNITVKEGDYLSIDGSTGRVILGTVPMKDPELSPEFIKLLEWADELKRLEVRANADTPEDAQKAREFGAKGIGLCRTEH MFMGPERLPHVQRMILAETKEEREEALSHLLPMQEEDFYGILKAMEGYPVCIRLLDPPLHEFLPSLEELLVETTELRVRG DNPELLAEKEALLKKVKSLHEFNPMLGHRGCRLGITYPEVYEMQIRAIFNAAARLTKEGYKVYPEVEIPLTIDVNEMKFF KERIDAIAREVMEREGVTFHYTTGTMIELPRAALLADELAEVAEFFSFGTNDLTQTTLGFSRDDAEGKFLTHYLDMKILK ENPFIVLDRKGVGKLMKIAVEGGRKTRPDLLVGICGEHGGEPSSVEFCHQIGLDFVSCSPYRVPIARLAAAQAAVAEGEI VGTK
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=465, Percent_Identity=25.1612903225806, Blast_Score=113, Evalue=6e-26, Organism=Escherichia coli, GI48994992, Length=453, Percent_Identity=24.5033112582781, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1787994, Length=715, Percent_Identity=23.7762237762238, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1789193, Length=466, Percent_Identity=23.8197424892704, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1788726, Length=467, Percent_Identity=23.1263383297645, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 98601; Mature: 98470
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKYVYLFHEGRADMKDLLGGKGANLAEMTNIGLPVPPGMTITTEACREYYRLGGKFPEG CCEEEEEEECCCCCHHHHHCCCCCCHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCHH LMEEVKEKLVYIEEKTGKKFGDPQNPLLVSVRSGAKFSMPGMMDTILNLGLNEETVEGLA HHHHHHHHHEEEEHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHH QNTQNPRFAYDAYRRFIQMFGDVVLEIPKHEFEHILDRQKEKEGVTFDQELSAEALKEVI HCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH TRYKELVERKTGKPFPSDPMVQLTMAIEAVFKSWNNDRAIVYRNLNKIPHDLGTAVNIQS HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHCCCEEEHH MVFGNMGNDSGTGVAFTRNPSTGEKVLYGEYLTNAQGEDVVAGIRTPSPISKLKEEMPEV HHCCCCCCCCCCEEEEECCCCCCCEEEEEHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH YEQFVSIAKLLESHYKNMQDIEFTIERGKLYILQTRNGKRTAQAAVKIAHDMVEEGLITK HHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC KEAILMVEPGQLDQLLHRQIDPSAKVEVIAKGLPASPGAASGIVVFDADEAEKLGKEGKK CCEEEEECCCHHHHHHHHHCCCCCCHHHEECCCCCCCCCCCCEEEEECCHHHHHCCCCCE VLLVRTETTPDDIHGIVAAQGVLTSRGGMTSHAAVVARGMGKPCVCGCEAIKIDYEKKLF EEEEEECCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHCCCCCCEECCEEEEEECCCEEE TVDNITVKEGDYLSIDGSTGRVILGTVPMKDPELSPEFIKLLEWADELKRLEVRANADTP EECCEEEECCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCC EDAQKAREFGAKGIGLCRTEHMFMGPERLPHVQRMILAETKEEREEALSHLLPMQEEDFY HHHHHHHHHCCCCCCEEECCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH GILKAMEGYPVCIRLLDPPLHEFLPSLEELLVETTELRVRGDNPELLAEKEALLKKVKSL HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHH HEFNPMLGHRGCRLGITYPEVYEMQIRAIFNAAARLTKEGYKVYPEVEIPLTIDVNEMKF HHCCHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEEEEEEHHHHHH FKERIDAIAREVMEREGVTFHYTTGTMIELPRAALLADELAEVAEFFSFGTNDLTQTTLG HHHHHHHHHHHHHHHCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC FSRDDAEGKFLTHYLDMKILKENPFIVLDRKGVGKLMKIAVEGGRKTRPDLLVGICGEHG CCCCCCCCCHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEECCCCC GEPSSVEFCHQIGLDFVSCSPYRVPIARLAAAQAAVAEGEIVGTK CCCCHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHCCCEECCC >Mature Secondary Structure TKYVYLFHEGRADMKDLLGGKGANLAEMTNIGLPVPPGMTITTEACREYYRLGGKFPEG CEEEEEEECCCCCHHHHHCCCCCCHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCHH LMEEVKEKLVYIEEKTGKKFGDPQNPLLVSVRSGAKFSMPGMMDTILNLGLNEETVEGLA HHHHHHHHHEEEEHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHH QNTQNPRFAYDAYRRFIQMFGDVVLEIPKHEFEHILDRQKEKEGVTFDQELSAEALKEVI HCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH TRYKELVERKTGKPFPSDPMVQLTMAIEAVFKSWNNDRAIVYRNLNKIPHDLGTAVNIQS HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHCCCEEEHH MVFGNMGNDSGTGVAFTRNPSTGEKVLYGEYLTNAQGEDVVAGIRTPSPISKLKEEMPEV HHCCCCCCCCCCEEEEECCCCCCCEEEEEHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH YEQFVSIAKLLESHYKNMQDIEFTIERGKLYILQTRNGKRTAQAAVKIAHDMVEEGLITK HHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC KEAILMVEPGQLDQLLHRQIDPSAKVEVIAKGLPASPGAASGIVVFDADEAEKLGKEGKK CCEEEEECCCHHHHHHHHHCCCCCCHHHEECCCCCCCCCCCCEEEEECCHHHHHCCCCCE VLLVRTETTPDDIHGIVAAQGVLTSRGGMTSHAAVVARGMGKPCVCGCEAIKIDYEKKLF EEEEEECCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHCCCCCCEECCEEEEEECCCEEE TVDNITVKEGDYLSIDGSTGRVILGTVPMKDPELSPEFIKLLEWADELKRLEVRANADTP EECCEEEECCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCC EDAQKAREFGAKGIGLCRTEHMFMGPERLPHVQRMILAETKEEREEALSHLLPMQEEDFY HHHHHHHHHCCCCCCEEECCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH GILKAMEGYPVCIRLLDPPLHEFLPSLEELLVETTELRVRGDNPELLAEKEALLKKVKSL HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHH HEFNPMLGHRGCRLGITYPEVYEMQIRAIFNAAARLTKEGYKVYPEVEIPLTIDVNEMKF HHCCHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEEEEEEHHHHHH FKERIDAIAREVMEREGVTFHYTTGTMIELPRAALLADELAEVAEFFSFGTNDLTQTTLG HHHHHHHHHHHHHHHCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC FSRDDAEGKFLTHYLDMKILKENPFIVLDRKGVGKLMKIAVEGGRKTRPDLLVGICGEHG CCCCCCCCCHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEECCCCC GEPSSVEFCHQIGLDFVSCSPYRVPIARLAAAQAAVAEGEIVGTK CCCCHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]