| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is ydiA [C]
Identifier: 78044534
GI number: 78044534
Start: 386864
End: 387697
Strand: Direct
Name: ydiA [C]
Synonym: CHY_0442
Alternate gene names: 78044534
Gene position: 386864-387697 (Clockwise)
Preceding gene: 78043601
Following gene: 78044221
Centisome position: 16.11
GC content: 46.52
Gene sequence:
>834_bases TTGGCAATTAATCTGAAGTTAGAGCAAATTCCAGTGGTTTATATTCTTTCTGATTCAATCGGGGAAACGGGGGAAGTGGT GGCGAAAGCGGCTGCCAGTCAATTTGATTCGGGCCGGGTTGATATTCGGCGGGTGCCGTACTTAAGTTCGGTTCGGGAAG TGGAAGAGGCGTTACAGGAAGCGGAAAGTGCAGGGGCCTTGGTGGTTTACACTCTGGTGCGCCCGGACTTAAAAGAGTAC CTGGAAAAGCGAGCCCATGAACTTTCCCTTCCCCATGTGGATATCATGGGACCGATGTTGGAGGGTTTAAAGCAAATCAC CAAGCAAAATCCTAAATACCAGCCCGGATTAATTCGCAAAATGGATGAAGCTTACTTTAGCAAGGTAGAAGCGATTGAAT TTGCCGTTAAATACGATGACGGCAAAGAACCTCGGGGATTGCTGCGGGCGGATTTGGTGGTAATTGGGGTTTCGCGAACT TCTAAAACTCCCCTTTGCATGTATTTGGCCCATAAGGGGATCAAAGCGGCAAACGTGCCGTTAGTACCGGAGGCTACTCC CCCGGAAGAATTGTTTAAAATTCCCCCTCATAAAGTTGTGGGACTTACCATAAAACCTTCAATTTTATTTGAGATCAGGA AGGAAAGGCTAAAAACATTGGGACTATCCCAAACGGCCGATTATGCTAACATGGAAAGAATTTTGATGGAGCTGGATTAT GCTCTGGGTATTATGAAAAAAATCGGCTGTGCCGTAATTGATGTGAGTAATAAAGCGGTGGAGGAAACGGCAGCCAGGGT GTTAGAAATTTACAGGAAAGGGGTAGGGAGGTAA
Upstream 100 bases:
>100_bases GCTGCATGAAGGTCGGGAAAAATACCGGGTGGTGGGTAGGTTTACCAAAACCAACATTACAAGGCTTTTTGTCAGCCTGG CCGGAAAGTAAAAGGAGGTA
Downstream 100 bases:
>100_bases TGACCAAATACGTTTACTTATTTCATGAAGGCCGCGCTGACATGAAAGATTTATTGGGGGGAAAAGGGGCCAATTTAGCG GAAATGACCAATATCGGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MAINLKLEQIPVVYILSDSIGETGEVVAKAAASQFDSGRVDIRRVPYLSSVREVEEALQEAESAGALVVYTLVRPDLKEY LEKRAHELSLPHVDIMGPMLEGLKQITKQNPKYQPGLIRKMDEAYFSKVEAIEFAVKYDDGKEPRGLLRADLVVIGVSRT SKTPLCMYLAHKGIKAANVPLVPEATPPEELFKIPPHKVVGLTIKPSILFEIRKERLKTLGLSQTADYANMERILMELDY ALGIMKKIGCAVIDVSNKAVEETAARVLEIYRKGVGR
Sequences:
>Translated_277_residues MAINLKLEQIPVVYILSDSIGETGEVVAKAAASQFDSGRVDIRRVPYLSSVREVEEALQEAESAGALVVYTLVRPDLKEY LEKRAHELSLPHVDIMGPMLEGLKQITKQNPKYQPGLIRKMDEAYFSKVEAIEFAVKYDDGKEPRGLLRADLVVIGVSRT SKTPLCMYLAHKGIKAANVPLVPEATPPEELFKIPPHKVVGLTIKPSILFEIRKERLKTLGLSQTADYANMERILMELDY ALGIMKKIGCAVIDVSNKAVEETAARVLEIYRKGVGR >Mature_276_residues AINLKLEQIPVVYILSDSIGETGEVVAKAAASQFDSGRVDIRRVPYLSSVREVEEALQEAESAGALVVYTLVRPDLKEYL EKRAHELSLPHVDIMGPMLEGLKQITKQNPKYQPGLIRKMDEAYFSKVEAIEFAVKYDDGKEPRGLLRADLVVIGVSRTS KTPLCMYLAHKGIKAANVPLVPEATPPEELFKIPPHKVVGLTIKPSILFEIRKERLKTLGLSQTADYANMERILMELDYA LGIMKKIGCAVIDVSNKAVEETAARVLEIYRKGVGR
Specific function: Unknown
COG id: COG1806
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate, phosphate dikinase regulatory protein family
Homologues:
Organism=Escherichia coli, GI1787995, Length=273, Percent_Identity=29.3040293040293, Blast_Score=97, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y442_CARHZ (Q3AEY1)
Other databases:
- EMBL: CP000141 - RefSeq: YP_359303.1 - STRING: Q3AEY1 - GeneID: 3727653 - GenomeReviews: CP000141_GR - KEGG: chy:CHY_0442 - NMPDR: fig|246194.3.peg.902 - TIGR: CHY_0442 - eggNOG: COG1806 - HOGENOM: HBG304855 - OMA: AMEFAVM - ProtClustDB: PRK05339 - BioCyc: CHYD246194:CHY_0442-MONOMER - HAMAP: MF_01062 - InterPro: IPR005177
Pfam domain/function: PF03618 DUF299
EC number: NA
Molecular weight: Translated: 30772; Mature: 30641
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAINLKLEQIPVVYILSDSIGETGEVVAKAAASQFDSGRVDIRRVPYLSSVREVEEALQE CEEEEEEHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH AESAGALVVYTLVRPDLKEYLEKRAHELSLPHVDIMGPMLEGLKQITKQNPKYQPGLIRK HHCCCCEEEEEHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH MDEAYFSKVEAIEFAVKYDDGKEPRGLLRADLVVIGVSRTSKTPLCMYLAHKGIKAANVP HHHHHHHHHHHHHEEEEECCCCCCCHHHEEEEEEEEECCCCCCCEEHHHHHCCCCCCCCC LVPEATPPEELFKIPPHKVVGLTIKPSILFEIRKERLKTLGLSQTADYANMERILMELDY CCCCCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH ALGIMKKIGCAVIDVSNKAVEETAARVLEIYRKGVGR HHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AINLKLEQIPVVYILSDSIGETGEVVAKAAASQFDSGRVDIRRVPYLSSVREVEEALQE EEEEEEHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH AESAGALVVYTLVRPDLKEYLEKRAHELSLPHVDIMGPMLEGLKQITKQNPKYQPGLIRK HHCCCCEEEEEHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH MDEAYFSKVEAIEFAVKYDDGKEPRGLLRADLVVIGVSRTSKTPLCMYLAHKGIKAANVP HHHHHHHHHHHHHEEEEECCCCCCCHHHEEEEEEEEECCCCCCCEEHHHHHCCCCCCCCC LVPEATPPEELFKIPPHKVVGLTIKPSILFEIRKERLKTLGLSQTADYANMERILMELDY CCCCCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH ALGIMKKIGCAVIDVSNKAVEETAARVLEIYRKGVGR HHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA