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The map label for this gene is yqgF [C]

Identifier: 78044200

GI number: 78044200

Start: 471262

End: 471678

Strand: Direct

Name: yqgF [C]

Synonym: CHY_0542

Alternate gene names: 78044200

Gene position: 471262-471678 (Clockwise)

Preceding gene: 78042764

Following gene: 78044493

Centisome position: 19.62

GC content: 42.69

Gene sequence:

>417_bases
ATGAAAGTTTTAGGACTGGATGTTGGAGATAAAAAAATTGGGGTTGCGCTGTCCGATGAACTTGGCCTTACGGCTCAAGG
ATTAACGGTTATTTACCGGACAAGCTTAAAAAAAGATTTGGAGGAAATAAAAAAAATCATTGACCTGCATCATGTTACCG
AAGTTGTTATTGGTTACCCGCGCAATATGAACGGGACTGCAGGACCCCGGGCGGAGCTGGTTAAGCGGTTTGCCCGGGAG
CTTTACAAATTTACAGGGATTAAACCCGTTTTTTGGGATGAACGTTTATCTACCGTGGAAGCGGAAAAGCTATTAATAAG
CGGAGATATCAGCCGCCGGAAGCGAAAAAAGGTAATTGATAAGCTGGCGGCAACGCTCATCCTTTCGGGTTATCTAAATT
ATAAAAGTAAAAATTAG

Upstream 100 bases:

>100_bases
AAAGTGCGGGTAAATCAGGAGAAATGCCTTTTTTGCGGATACTGTGGTGCTCACTGTCCTCATTTTGCCATCAAAGTAAT
TTAACCCGGCGGGTGGATGG

Downstream 100 bases:

>100_bases
AAAGAGGTGGAATCTATGGAAGTAGGCGAAGTAATTACCCTCGTTGATGAGGAACAAAATGAATTTGAATTTGCCGTCAT
TGACCTTCTTGAAGTTGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPRNMNGTAGPRAELVKRFARE
LYKFTGIKPVFWDERLSTVEAEKLLISGDISRRKRKKVIDKLAATLILSGYLNYKSKN

Sequences:

>Translated_138_residues
MKVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPRNMNGTAGPRAELVKRFARE
LYKFTGIKPVFWDERLSTVEAEKLLISGDISRRKRKKVIDKLAATLILSGYLNYKSKN
>Mature_138_residues
MKVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPRNMNGTAGPRAELVKRFARE
LYKFTGIKPVFWDERLSTVEAEKLLISGDISRRKRKKVIDKLAATLILSGYLNYKSKN

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=130, Percent_Identity=32.3076923076923, Blast_Score=69, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CARHZ (Q3AEN4)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_359400.1
- ProteinModelPortal:   Q3AEN4
- SMR:   Q3AEN4
- STRING:   Q3AEN4
- GeneID:   3727317
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0542
- NMPDR:   fig|246194.3.peg.75
- TIGR:   CHY_0542
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- BioCyc:   CHYD246194:CHY_0542-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15529; Mature: 15529

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYP
CEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RNMNGTAGPRAELVKRFARELYKFTGIKPVFWDERLSTVEAEKLLISGDISRRKRKKVID
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KLAATLILSGYLNYKSKN
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYP
CEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RNMNGTAGPRAELVKRFARELYKFTGIKPVFWDERLSTVEAEKLLISGDISRRKRKKVID
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KLAATLILSGYLNYKSKN
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA