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The map label for this gene is cspC2 [H]

Identifier: 78044182

GI number: 78044182

Start: 130978

End: 131175

Strand: Direct

Name: cspC2 [H]

Synonym: CHY_0157

Alternate gene names: 78044182

Gene position: 130978-131175 (Clockwise)

Preceding gene: 78044633

Following gene: 78042825

Centisome position: 5.45

GC content: 48.99

Gene sequence:

>198_bases
ATGCAAGGAAAAGTTAAATGGTTTGACCCGGCCAAAGGCTACGGGTTCATTGAAAGGGAAGATGGCGGCGACGTGTTTGT
CCATTTTTCCGCCATTAAGGGCAACGGGTTTAAAACTTTAGAAGAAGGCCAGAGGGTAGAGTTCAACATTGTTGAAGGCA
CCCGGGGCCCGCAAGCGGCTGACGTCGTAAAACTATAA

Upstream 100 bases:

>100_bases
AGAACCGGAAGTTTAAAAAAAGTTTGACAAAGGCCGGGAAACGTGTTAGAGTTAGAGCATGGCTTTATGCCGAATAAAAT
TTTCAGGAGGCATTAGATCG

Downstream 100 bases:

>100_bases
ATTGCCCGCAAAACCCCTCCGTTTACCGGAGGGGTTTTTTAACGCCTAATTCGGGGACGGTTCTGATATTTGCGTCTAAA
CGCCAAAAAAACCGTCCCTT

Product: cold shock protein CspC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MQGKVKWFDPAKGYGFIEREDGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRGPQAADVVKL

Sequences:

>Translated_65_residues
MQGKVKWFDPAKGYGFIEREDGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRGPQAADVVKL
>Mature_65_residues
MQGKVKWFDPAKGYGFIEREDGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRGPQAADVVKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=65.1515151515152, Blast_Score=90, Evalue=2e-20,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=60.6060606060606, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=60.6060606060606, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=62.1212121212121, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=56.0606060606061, Blast_Score=78, Evalue=9e-17,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=56.25, Blast_Score=75, Evalue=9e-16,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=46.1538461538462, Blast_Score=65, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7202; Mature: 7202

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGKVKWFDPAKGYGFIEREDGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRGPQAA
CCCCEEEECCCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCC
DVVKL
EEECC
>Mature Secondary Structure
MQGKVKWFDPAKGYGFIEREDGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRGPQAA
CCCCEEEECCCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCC
DVVKL
EEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]