Click here to switch to the map view.

The map label for this gene is yfiA [H]

Identifier: 78044633

GI number: 78044633

Start: 130360

End: 130893

Strand: Direct

Name: yfiA [H]

Synonym: CHY_0156

Alternate gene names: 78044633

Gene position: 130360-130893 (Clockwise)

Preceding gene: 78043760

Following gene: 78044182

Centisome position: 5.43

GC content: 41.57

Gene sequence:

>534_bases
ATGAATGTTCAAGTGCGGGGTAAAAATATCGAGGTCACTCCTGCATTAAAGGAGTACGCGGAAAAGAGACTCGCCAAGCT
GGAAAAGTATTTGCCGAAAATTGATGTGGTGCATGTAACGCTTTTGGTGGAAGGGGATTTACATAAAACCGAAGTAACGA
TACCGGTAGCCGGATACCTTCTTAGAGGTGAAGAGGAAAGCCCCGATATGTATTCATCCATAGATTTGGTGGTAGATAAG
TTAGAAAGGCAGGCCAAAAAATATAAAGAAAAGCTTTACGCCCGCTTTAAAAATAATAAAAATATTGCAACAGGGGAGAA
AAGCGCCGAAACTACCCCTGAACCGGATAATGAAATTAAAATTGTTAAATCCAAGCGTTTTGCGATAAAACCCATGTCAC
CGGAAGAAGCGGCCATGCAGATGGAGCTTTTAGGGCATTCGTTCTTTGTCTTTACCAATGCGGATACCGATGAAATAAAT
GTTGTATATAAACGGCGGGATGGGAAGTACGGCTTAATAGAACCGGAAGTTTAA

Upstream 100 bases:

>100_bases
TAAACCCCAGGGATATTCTCTGGGGTTTTTTAGTAATTATAATGTGTGGAGCTGGTTTTAAAGGTTGCAGGTTAAAATAA
TAAAAAAAGGGGGTATTTCC

Downstream 100 bases:

>100_bases
AAAAAGTTTGACAAAGGCCGGGAAACGTGTTAGAGTTAGAGCATGGCTTTATGCCGAATAAAATTTTCAGGAGGCATTAG
ATCGATGCAAGGAAAAGTTA

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MNVQVRGKNIEVTPALKEYAEKRLAKLEKYLPKIDVVHVTLLVEGDLHKTEVTIPVAGYLLRGEEESPDMYSSIDLVVDK
LERQAKKYKEKLYARFKNNKNIATGEKSAETTPEPDNEIKIVKSKRFAIKPMSPEEAAMQMELLGHSFFVFTNADTDEIN
VVYKRRDGKYGLIEPEV

Sequences:

>Translated_177_residues
MNVQVRGKNIEVTPALKEYAEKRLAKLEKYLPKIDVVHVTLLVEGDLHKTEVTIPVAGYLLRGEEESPDMYSSIDLVVDK
LERQAKKYKEKLYARFKNNKNIATGEKSAETTPEPDNEIKIVKSKRFAIKPMSPEEAAMQMELLGHSFFVFTNADTDEIN
VVYKRRDGKYGLIEPEV
>Mature_177_residues
MNVQVRGKNIEVTPALKEYAEKRLAKLEKYLPKIDVVHVTLLVEGDLHKTEVTIPVAGYLLRGEEESPDMYSSIDLVVDK
LERQAKKYKEKLYARFKNNKNIATGEKSAETTPEPDNEIKIVKSKRFAIKPMSPEEAAMQMELLGHSFFVFTNADTDEIN
VVYKRRDGKYGLIEPEV

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=92, Percent_Identity=41.304347826087, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20231; Mature: 20231

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVQVRGKNIEVTPALKEYAEKRLAKLEKYLPKIDVVHVTLLVEGDLHKTEVTIPVAGYL
CCEEEECCCEEECHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEEEEE
LRGEEESPDMYSSIDLVVDKLERQAKKYKEKLYARFKNNKNIATGEKSAETTPEPDNEIK
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
IVKSKRFAIKPMSPEEAAMQMELLGHSFFVFTNADTDEINVVYKRRDGKYGLIEPEV
EEECCEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MNVQVRGKNIEVTPALKEYAEKRLAKLEKYLPKIDVVHVTLLVEGDLHKTEVTIPVAGYL
CCEEEECCCEEECHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEEEEE
LRGEEESPDMYSSIDLVVDKLERQAKKYKEKLYARFKNNKNIATGEKSAETTPEPDNEIK
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
IVKSKRFAIKPMSPEEAAMQMELLGHSFFVFTNADTDEINVVYKRRDGKYGLIEPEV
EEECCEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]