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The map label for this gene is rpfG [H]

Identifier: 78044129

GI number: 78044129

Start: 2184410

End: 2185651

Strand: Direct

Name: rpfG [H]

Synonym: CHY_2441

Alternate gene names: 78044129

Gene position: 2184410-2185651 (Clockwise)

Preceding gene: 78043969

Following gene: 78043433

Centisome position: 90.96

GC content: 40.18

Gene sequence:

>1242_bases
ATGTATGAGATAGATTTAACCGACGTCGTTATAGCTTTAACCAAAGCTTTAGAATTTACCAATGAAGACCTGGGATATCA
CCACGAACGGGTTGCCTACATAGCCGCTTCGATCGGGAAAAAACTCAATCTTTCGGAAAAGGATTATGAAACTTTGTTTT
GGGCTGCCTACTTACACGATTTGGGCGCCGGAGCAAAATTAGTCGACAGGGAAATTCATAATTTAGATAAATACGACACT
GCCCATGCCAACTTTGGCTATGAACTTTTAAAAGATGTACCGTTTTTTACCGAAGTAGCTCAGGTAATAAAACATCACCA
TACCAAATATATTAATTTTACTTCCGCTGAAAAAAATTCCCCCCTTGCTTTCTTAAGCCAAATTATCTTTGCTGCCGACC
AGGTAGATTTATATTTAAAACCAAACAAACTTGCCCTTTTACAACGAAGTGAAATTGAACGGTTTTTTAGGAAAAATGTT
CAAATCCTCTTTAATGAAGATGTAGTTGAAGCTTTCCTGGATTTATCTCAAAAAGAAAGTTTCTGGCTTGACCTTACTAC
ATATTATATTGAAGATAGATTAAAGGCTTTAAGACCAAAAACCAAAATTTTAGCCGGTGAACAGGGGCTAAAGCTTTTAA
CCGTGCCTTTTGCCCGGATTATCGACGCGAAAAGCCCTTTTACGGAAAGGCATTCTTTAAAAGTTGCAGCCCTAAGCGGC
CAGCTTGCCGAAATTGCCGGCCTTCCCGGGCAAAAATCTTTAATTGAAATCGCCGGTCTCCTGCACGATATCGGAAAACT
TTCCGTTTCCAATAAGATTTTAGAAAAAAACGGCCCGCTAAACGATGAAGAGTATGCACTAATTAAAACCCATCCTTATT
ATACCTATTACTTACTAATACAAGTCACAGGTTTTGAAAAAGTCGCCCAGTGGGCCGGTTACCACCATGAACAGCCCAAC
GGCCAGGGTTATCCTTTTAAGCTTACCAAAGACCAGCTTGACCTTCCTTCCCGCATTCTGGCGGTAGCCGATAAATGGGT
CGCTTTAAGGGAAAACCGGCCTTACCGGGATGCTTTAAGTATTGAAAATGCTCTCGATATCTTGGAAAACATGGCCCAAA
AGGAAATAGTAGACCCTGAGGTAGTAAAGCTTTTAAAAGAAAATATCGATTATCTGGAAAAATCTCAGGAAGAAGAAATT
GGTCAGATTACCGGGAAAACTAACGAACCGCTCCTTAGCTAA

Upstream 100 bases:

>100_bases
CCTCAAAGCTTTGTCCTTTCAATAAATTGTCGAAGTATGGTATAATTACGTCGGTTTTAAATTATTCTAATTATTTTTAT
CAACGGGGGGGTGGTAAGTG

Downstream 100 bases:

>100_bases
GGAGCAATTTCCCCTGCCCAAAATAAATGCCCTCTATCGGAAATTTTGGTAGAGGGCATTTTTGTTAAAAGCATTTTGAC
AAAAATTAACCTTTTCCTGC

Product: HDIG domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MYEIDLTDVVIALTKALEFTNEDLGYHHERVAYIAASIGKKLNLSEKDYETLFWAAYLHDLGAGAKLVDREIHNLDKYDT
AHANFGYELLKDVPFFTEVAQVIKHHHTKYINFTSAEKNSPLAFLSQIIFAADQVDLYLKPNKLALLQRSEIERFFRKNV
QILFNEDVVEAFLDLSQKESFWLDLTTYYIEDRLKALRPKTKILAGEQGLKLLTVPFARIIDAKSPFTERHSLKVAALSG
QLAEIAGLPGQKSLIEIAGLLHDIGKLSVSNKILEKNGPLNDEEYALIKTHPYYTYYLLIQVTGFEKVAQWAGYHHEQPN
GQGYPFKLTKDQLDLPSRILAVADKWVALRENRPYRDALSIENALDILENMAQKEIVDPEVVKLLKENIDYLEKSQEEEI
GQITGKTNEPLLS

Sequences:

>Translated_413_residues
MYEIDLTDVVIALTKALEFTNEDLGYHHERVAYIAASIGKKLNLSEKDYETLFWAAYLHDLGAGAKLVDREIHNLDKYDT
AHANFGYELLKDVPFFTEVAQVIKHHHTKYINFTSAEKNSPLAFLSQIIFAADQVDLYLKPNKLALLQRSEIERFFRKNV
QILFNEDVVEAFLDLSQKESFWLDLTTYYIEDRLKALRPKTKILAGEQGLKLLTVPFARIIDAKSPFTERHSLKVAALSG
QLAEIAGLPGQKSLIEIAGLLHDIGKLSVSNKILEKNGPLNDEEYALIKTHPYYTYYLLIQVTGFEKVAQWAGYHHEQPN
GQGYPFKLTKDQLDLPSRILAVADKWVALRENRPYRDALSIENALDILENMAQKEIVDPEVVKLLKENIDYLEKSQEEEI
GQITGKTNEPLLS
>Mature_413_residues
MYEIDLTDVVIALTKALEFTNEDLGYHHERVAYIAASIGKKLNLSEKDYETLFWAAYLHDLGAGAKLVDREIHNLDKYDT
AHANFGYELLKDVPFFTEVAQVIKHHHTKYINFTSAEKNSPLAFLSQIIFAADQVDLYLKPNKLALLQRSEIERFFRKNV
QILFNEDVVEAFLDLSQKESFWLDLTTYYIEDRLKALRPKTKILAGEQGLKLLTVPFARIIDAKSPFTERHSLKVAALSG
QLAEIAGLPGQKSLIEIAGLLHDIGKLSVSNKILEKNGPLNDEEYALIKTHPYYTYYLLIQVTGFEKVAQWAGYHHEQPN
GQGYPFKLTKDQLDLPSRILAVADKWVALRENRPYRDALSIENALDILENMAQKEIVDPEVVKLLKENIDYLEKSQEEEI
GQITGKTNEPLLS

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 47121; Mature: 47121

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEIDLTDVVIALTKALEFTNEDLGYHHERVAYIAASIGKKLNLSEKDYETLFWAAYLHD
CEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LGAGAKLVDREIHNLDKYDTAHANFGYELLKDVPFFTEVAQVIKHHHTKYINFTSAEKNS
HCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCC
PLAFLSQIIFAADQVDLYLKPNKLALLQRSEIERFFRKNVQILFNEDVVEAFLDLSQKES
CHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCC
FWLDLTTYYIEDRLKALRPKTKILAGEQGLKLLTVPFARIIDAKSPFTERHSLKVAALSG
EEEHHHHHHHHHHHHHHCCHHHEEECCCCCEEEEHHHHHHHCCCCCCCHHHCEEEEECCC
QLAEIAGLPGQKSLIEIAGLLHDIGKLSVSNKILEKNGPLNDEEYALIKTHPYYTYYLLI
CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE
QVTGFEKVAQWAGYHHEQPNGQGYPFKLTKDQLDLPSRILAVADKWVALRENRPYRDALS
EECCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
IENALDILENMAQKEIVDPEVVKLLKENIDYLEKSQEEEIGQITGKTNEPLLS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MYEIDLTDVVIALTKALEFTNEDLGYHHERVAYIAASIGKKLNLSEKDYETLFWAAYLHD
CEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LGAGAKLVDREIHNLDKYDTAHANFGYELLKDVPFFTEVAQVIKHHHTKYINFTSAEKNS
HCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCC
PLAFLSQIIFAADQVDLYLKPNKLALLQRSEIERFFRKNVQILFNEDVVEAFLDLSQKES
CHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCC
FWLDLTTYYIEDRLKALRPKTKILAGEQGLKLLTVPFARIIDAKSPFTERHSLKVAALSG
EEEHHHHHHHHHHHHHHCCHHHEEECCCCCEEEEHHHHHHHCCCCCCCHHHCEEEEECCC
QLAEIAGLPGQKSLIEIAGLLHDIGKLSVSNKILEKNGPLNDEEYALIKTHPYYTYYLLI
CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEE
QVTGFEKVAQWAGYHHEQPNGQGYPFKLTKDQLDLPSRILAVADKWVALRENRPYRDALS
EECCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
IENALDILENMAQKEIVDPEVVKLLKENIDYLEKSQEEEIGQITGKTNEPLLS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]