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The map label for this gene is yqiR [H]

Identifier: 78043934

GI number: 78043934

Start: 1173289

End: 1175058

Strand: Direct

Name: yqiR [H]

Synonym: CHY_1318

Alternate gene names: 78043934

Gene position: 1173289-1175058 (Clockwise)

Preceding gene: 78043517

Following gene: 78044740

Centisome position: 48.86

GC content: 31.02

Gene sequence:

>1770_bases
ATGTGTGGCAATGTTAATGAGGAAGGGGTTAAAAAATATTTAAAGGAGTTAAGCAATAAAAAAAATGTAGTACCGGTATT
TGTTAGTGTATTTAATTTAAAAGGAGAGTTATTAGCTTTTTACTGTAAAGTTTGTGAAAATTGCAAATTCAAAGAAAGCC
CCTTTCCTTTAGAGCATGAATTACTAAATATGTGTTTTAATGATGAGTTAAAAATTATAGTAGAGTCAATTATTGAAGAA
GTGGACAGGTTGGATGATTTAGTAATTAAAGTTAAGACAGTAAAAATAAGTAGCTTATTAAAAAAAATTAAAGAACTTTC
ATTCTTGCAAGAAGAACTGGAAGCTATTATCGAAAGCTCGTATGATGGTATTTACGTTTCAGACTGTACTGGAAAAACAT
TAAGGATAAACAAAGCTTATGAGAGAATTACTGGTATAAAAAAAGATGAAGTTATTGGGAGACGACTTGATGAATTAAAG
GCTGAAGGTTATTTTTCCGAAATTGTTTACAAGCAGGTAGTGAAAGAAAAACGGCCTGTAACAATTTTGCAAAAAATAAA
AAATGAAAAAGAAGTTGTGGTAACGGGAAATCCTGTATTAGACAATAGTGGTGAAGTTAAACGTGTTGTGACCAATGTTC
GTGATATTTCTGAGTTAAACATGTTACGGAGAGAACTTGCTGAAGTTAAAGAAAAGTCAAAGCATTATCAACGAAAAATT
GTAGAACTTCAAGAAAAATTAACTCTATTTTGTCAAGCTCAGCAAGACTTTAAAGGTTTTATTATCAAAAGTCCTCTAAT
GAAGGATGTAATATATAAGGCATTGAGAGTAGCAAGGACTGATACTACAGTCTTAATAATTGGAGAGTCTGGAACTGGCA
AGGAAGTTATTGCCCGGTTTATTCATTTTAATAGTTTACGTAAAGATAAAGCGTTTTTACCTGTTAATTGTGGTGCAATT
CCTGAAAATTTAATGGAATCTGAATTTTTTGGTTATGAACCTGGTGCTTTTACTGGTGCCCTTAAAACAGGTAAAATGGG
GTTTTTTGAGTTAGCTCAGGGAGGAACGCTATTTTTAGATGAAGTAGGAGAACTTCCTTTGCATTTACAAGTAAAATTAC
TTAGGGCATTACAAACGAAAGAAATAATGCGTTTGGGAAGTACAAAACCTATAAAAGTAGATGTACGCATTATTGCTGCA
ACTAATCGCAATTTAGCTAAATTGGTGGAAGAAGGTAAGTTTCGAGAAGATTTATATTACAGGCTAAATGTTATATCTAT
TGAAATACCTCCTTTACGAAAGCGAAAAGAAGAAATTATTCCAATGGCAATGGAATTTCTTACTCGAATTAATGAAAAGT
ATGGTAGTGAAAAAAAATTTACAAGAGAAGTATTAGAAATATTAAAAGAATATAAATGGCCTGGTAATATTCGGGAATTG
GAAAATGTAATTGAACATGCATATGTGGTAAGTCAGGATGAAATTAACGTTGAAGATTTGCCTATACATTTGGATTCACT
TTACGGGGAACCTGGTAACATTGCTTTAATTAGAAAGACATTACAAAATAGGGAAAATATCACTTTAGATGAAGCAATTA
GTTTAGTTGAAAAGAAGTTAATAGAAGATGCTTTGTTAAAATATGGTACAGAAACTCGAGCAGCAAGTGTTTTAGGTGTA
AATCAATCGACTATATCGCGGAAGATTAAAAAGTACAATATTGATGTTAAAAAAATAATTGAAAAAAATAACGAAAAAGA
ATTAAGTTAG

Upstream 100 bases:

>100_bases
GTAGAAACTGGTGGTGGCTTTTATATTAGGAAATTCAATATTAGAAAATTTTTTTTCTTACCCTGGGGCAGAGTGAGTGG
TGAATATGAATTGGAATTAT

Downstream 100 bases:

>100_bases
TAATTGTGCATTTATTTATGCAAAAATAAATAAAATGCATTCATGCCTAAAAACATTAACGTTTTTGTAAGATTTTGCTT
TTTCATTAAAAATACAAAAA

Product: sigma-54-dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MCGNVNEEGVKKYLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCKFKESPFPLEHELLNMCFNDELKIIVESIIEE
VDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKDEVIGRRLDELK
AEGYFSEIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVLDNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHYQRKI
VELQEKLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKDKAFLPVNCGAI
PENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAA
TNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTRINEKYGSEKKFTREVLEILKEYKWPGNIREL
ENVIEHAYVVSQDEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKYGTETRAASVLGV
NQSTISRKIKKYNIDVKKIIEKNNEKELS

Sequences:

>Translated_589_residues
MCGNVNEEGVKKYLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCKFKESPFPLEHELLNMCFNDELKIIVESIIEE
VDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKDEVIGRRLDELK
AEGYFSEIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVLDNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHYQRKI
VELQEKLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKDKAFLPVNCGAI
PENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAA
TNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTRINEKYGSEKKFTREVLEILKEYKWPGNIREL
ENVIEHAYVVSQDEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKYGTETRAASVLGV
NQSTISRKIKKYNIDVKKIIEKNNEKELS
>Mature_589_residues
MCGNVNEEGVKKYLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCKFKESPFPLEHELLNMCFNDELKIIVESIIEE
VDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKDEVIGRRLDELK
AEGYFSEIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVLDNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHYQRKI
VELQEKLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKDKAFLPVNCGAI
PENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAA
TNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTRINEKYGSEKKFTREVLEILKEYKWPGNIREL
ENVIEHAYVVSQDEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKYGTETRAASVLGV
NQSTISRKIKKYNIDVKKIIEKNNEKELS

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=370, Percent_Identity=44.0540540540541, Blast_Score=275, Evalue=8e-75,
Organism=Escherichia coli, GI1789233, Length=556, Percent_Identity=32.7338129496403, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1790437, Length=316, Percent_Identity=45.253164556962, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI87082117, Length=233, Percent_Identity=52.7896995708155, Blast_Score=249, Evalue=4e-67,
Organism=Escherichia coli, GI1790299, Length=331, Percent_Identity=42.5981873111783, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1789087, Length=328, Percent_Identity=42.9878048780488, Blast_Score=238, Evalue=1e-63,
Organism=Escherichia coli, GI1788905, Length=332, Percent_Identity=39.7590361445783, Blast_Score=234, Evalue=8e-63,
Organism=Escherichia coli, GI1786524, Length=323, Percent_Identity=39.6284829721362, Blast_Score=229, Evalue=5e-61,
Organism=Escherichia coli, GI1787583, Length=333, Percent_Identity=36.3363363363363, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI87081872, Length=313, Percent_Identity=39.9361022364217, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI87082152, Length=217, Percent_Identity=46.5437788018433, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI87081858, Length=476, Percent_Identity=27.1008403361345, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI1789828, Length=296, Percent_Identity=33.445945945946, Blast_Score=133, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 67519; Mature: 67519

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGNVNEEGVKKYLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCKFKESPFPLEHE
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHH
LLNMCFNDELKIIVESIIEEVDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAIIESS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YDGIYVSDCTGKTLRINKAYERITGIKKDEVIGRRLDELKAEGYFSEIVYKQVVKEKRPV
CCCEEEECCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TILQKIKNEKEVVVTGNPVLDNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHYQRKI
HHHHHHCCCCEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELQEKLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARF
HHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
IHFNSLRKDKAFLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLD
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEH
EVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAATNRNLAKLVEEGKFREDLYY
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHCCCHHHHHEE
RLNVISIEIPPLRKRKEEIIPMAMEFLTRINEKYGSEKKFTREVLEILKEYKWPGNIREL
EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
ENVIEHAYVVSQDEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKL
HHHHHHHHEECCCCCCCCCCCEEHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
IEDALLKYGTETRAASVLGVNQSTISRKIKKYNIDVKKIIEKNNEKELS
HHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MCGNVNEEGVKKYLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCKFKESPFPLEHE
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHH
LLNMCFNDELKIIVESIIEEVDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAIIESS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YDGIYVSDCTGKTLRINKAYERITGIKKDEVIGRRLDELKAEGYFSEIVYKQVVKEKRPV
CCCEEEECCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TILQKIKNEKEVVVTGNPVLDNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHYQRKI
HHHHHHCCCCEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELQEKLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARF
HHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
IHFNSLRKDKAFLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLD
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEH
EVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAATNRNLAKLVEEGKFREDLYY
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHCCCHHHHHEE
RLNVISIEIPPLRKRKEEIIPMAMEFLTRINEKYGSEKKFTREVLEILKEYKWPGNIREL
EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
ENVIEHAYVVSQDEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKL
HHHHHHHHEECCCCCCCCCCCEEHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
IEDALLKYGTETRAASVLGVNQSTISRKIKKYNIDVKKIIEKNNEKELS
HHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]