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The map label for this gene is yabB [H]

Identifier: 78043617

GI number: 78043617

Start: 43493

End: 44242

Strand: Direct

Name: yabB [H]

Synonym: CHY_0054

Alternate gene names: 78043617

Gene position: 43493-44242 (Clockwise)

Preceding gene: 78042983

Following gene: 78043091

Centisome position: 1.81

GC content: 47.87

Gene sequence:

>750_bases
TTGACGAAGAAATACGCCGAACTGCCCCCTGATCGGGTGGACGATTTAAAAAGAGCCGGGCTGAAGATTTACCAGAACCC
GGCGCTTTTTTGTTTTGCGATTGATAGTGTCCTCCTGGCCTGGTTTACCAAAACAGCTCCCAACGACCGGGTAGTGGACC
TTGGAACCGGCAACGGCGTTGTTCCCCTGCTTTTATATGGAAGAAACCGGGAGATTGGGAAAATATACGGCATTGAAATT
CAGGAAAAGCTGTACCAGTTGGCGGTGAAGTCTGTAGCTTTAAACAATCTTGAAGAAAAAATCGAAATAATCCTTGGTGA
TTTAAAAGATGCACCCGCTATCCTCGGGAAGGGTTTTGATGTAGTAACCGCCAACCCTCCTTATCGCAAAAAGGGGGAGG
GGCGTTTAAATCCCGTGCCGGAAGTAGCGGTAGCCCGCCATGAGCTTTTAACTACTCTGGAAGACGTGGTGGCGACAGCG
GCAAAACTTTTAAAACCCCGGGGGAGTTTTTATTTAGTGCATCTGCCCGAAAGGCTTCCGGAAATCTTTACCCATTTTAC
CCGGTATAAACTAAATCCCGAAGTGTTACTGCCGGTGCAGCCCAAGCCCGGAGAGAACGTAAACCTTGTTTTAATAAAAG
CGGTTAAGGGGAGCCGGCGCAAATTAGAGTTTTTAGCTCCTTTGTGGGTTTATGAAAAAGACGGTCAATATTCCGAACAG
GTGCGCCGGATTTTTGAGGGGGAAGAGTAA

Upstream 100 bases:

>100_bases
CACGTTTGCCATGTGCATTTTGGCGAAGCCCGGGGTGATGAAGACTGCCTCTGGTGTATAACTTTTATCAAAGGAAGAAA
CAACGAGCGAGGGGAAGGAA

Downstream 100 bases:

>100_bases
TGGGAACCTTATATTTGGTACCGACACCCCTTGGCAACTTAAAAGATATTACCTTAAGGGCGTTAGATACCTTAAAAGAA
GTAGATATCATAGCCGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTKKYAELPPDRVDDLKRAGLKIYQNPALFCFAIDSVLLAWFTKTAPNDRVVDLGTGNGVVPLLLYGRNREIGKIYGIEI
QEKLYQLAVKSVALNNLEEKIEIILGDLKDAPAILGKGFDVVTANPPYRKKGEGRLNPVPEVAVARHELLTTLEDVVATA
AKLLKPRGSFYLVHLPERLPEIFTHFTRYKLNPEVLLPVQPKPGENVNLVLIKAVKGSRRKLEFLAPLWVYEKDGQYSEQ
VRRIFEGEE

Sequences:

>Translated_249_residues
MTKKYAELPPDRVDDLKRAGLKIYQNPALFCFAIDSVLLAWFTKTAPNDRVVDLGTGNGVVPLLLYGRNREIGKIYGIEI
QEKLYQLAVKSVALNNLEEKIEIILGDLKDAPAILGKGFDVVTANPPYRKKGEGRLNPVPEVAVARHELLTTLEDVVATA
AKLLKPRGSFYLVHLPERLPEIFTHFTRYKLNPEVLLPVQPKPGENVNLVLIKAVKGSRRKLEFLAPLWVYEKDGQYSEQ
VRRIFEGEE
>Mature_248_residues
TKKYAELPPDRVDDLKRAGLKIYQNPALFCFAIDSVLLAWFTKTAPNDRVVDLGTGNGVVPLLLYGRNREIGKIYGIEIQ
EKLYQLAVKSVALNNLEEKIEIILGDLKDAPAILGKGFDVVTANPPYRKKGEGRLNPVPEVAVARHELLTTLEDVVATAA
KLLKPRGSFYLVHLPERLPEIFTHFTRYKLNPEVLLPVQPKPGENVNLVLIKAVKGSRRKLEFLAPLWVYEKDGQYSEQV
RRIFEGEE

Specific function: Unknown

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 28071; Mature: 27940

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKYAELPPDRVDDLKRAGLKIYQNPALFCFAIDSVLLAWFTKTAPNDRVVDLGTGNGV
CCCCCCCCCCHHHHHHHHCCCEEECCCCEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCE
VPLLLYGRNREIGKIYGIEIQEKLYQLAVKSVALNNLEEKIEIILGDLKDAPAILGKGFD
EEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEE
VVTANPPYRKKGEGRLNPVPEVAVARHELLTTLEDVVATAAKLLKPRGSFYLVHLPERLP
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHH
EIFTHFTRYKLNPEVLLPVQPKPGENVNLVLIKAVKGSRRKLEFLAPLWVYEKDGQYSEQ
HHHHHHHHEECCCCEEEEECCCCCCCEEEEEEEECCCCCHHHHHHCCEEEEECCCCHHHH
VRRIFEGEE
HHHHHCCCC
>Mature Secondary Structure 
TKKYAELPPDRVDDLKRAGLKIYQNPALFCFAIDSVLLAWFTKTAPNDRVVDLGTGNGV
CCCCCCCCCHHHHHHHHCCCEEECCCCEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCE
VPLLLYGRNREIGKIYGIEIQEKLYQLAVKSVALNNLEEKIEIILGDLKDAPAILGKGFD
EEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEE
VVTANPPYRKKGEGRLNPVPEVAVARHELLTTLEDVVATAAKLLKPRGSFYLVHLPERLP
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHH
EIFTHFTRYKLNPEVLLPVQPKPGENVNLVLIKAVKGSRRKLEFLAPLWVYEKDGQYSEQ
HHHHHHHHEECCCCEEEEECCCCCCCEEEEEEEECCCCCHHHHHHCCEEEEECCCCHHHH
VRRIFEGEE
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]