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The map label for this gene is yagA [H]

Identifier: 78043439

GI number: 78043439

Start: 2250848

End: 2252095

Strand: Direct

Name: yagA [H]

Synonym: CHY_2518

Alternate gene names: 78043439

Gene position: 2250848-2252095 (Clockwise)

Preceding gene: 78044933

Following gene: 78043208

Centisome position: 93.73

GC content: 43.11

Gene sequence:

>1248_bases
ATGGATGAAAAAGTGCGTGAAAAGGTGGCTCTTTTCCGTTATGGCCTTCTGGCTCCTGTTCTAAATGGCCAGGTGTCTAA
TCAGCAGGAGTATTTTGCCCAAATTTGCTCTAAGGTTCATGAGGTGCCTTTTTATGGCCCTAAAGAATTTACTCCTAAAA
CTCTGGCCGGCTGGCTTCTTTCTTACCGCCGGTTTGGTTTTGATGGCCTTAAGCCTAAAATTCGTTCGGATCGGGGAAAA
CATCGAGTGCTTTCCCGGGAGCAGGAAGAGTATTTAATAGCTTTACGAAAAGAGCTCAGGGATTTGCCTGCTTCCGTTTT
TTATGAACGCTTAGTGGATAGGGGTGAGATTTTACCTAAGGATGTTTCCTATGCTACGGTTTATAGGCTACTGAAAAAGT
ATGGTTTGGTCGGTAATGAGTCCCCCAAATCCCCTGAACGCAAAAGGTTTTCTTATGATACGGTTAATGTTCTCTGGCAG
GGAGATATGTCTGTTGGTCCGTATATTGTGCAAAATGGCAAAAAGCTAAAGACTTTTCTTTTTGCTTTTATTGATGATTG
CTCAAGATTGGTTCCTTTTGCCCAGTTTTTCTTTTCAGAAAAGTTTGAGTCTCTACGAACTGTGTTCAAGGAAGCGTTAA
TTCGCCGGGGTATCCCTAAGATGGTTTATGTAGATAACGGCAAAATTTATCGCTCCGATACTTTCCAAATTGCTTGTGCC
AGTCTTGGTATTATCCTGACCCATACCCAGCCTTATGATGCTCCCAGTAAGGGAAAAATAGAACGGTTCTTTGGTACGGT
TAAGACCCGCTTTTTCCCTTTGCTGAAAGAAAAACCGGCATCTTCTTTAGAGGAGCTAAACCGCCGCTTCTGGCAGTGGT
TAGAGGAAGATTACCACCGAAAAGTCCATGCCTCTCTGGGTATGACTCCTTTAGATGTTTATTTATCTCAGGTAAGTCAG
GTGCGGATGATTGATGACCCCGCTTCCCTTGACCCGCTGTTTTTGAAAAGGGAAATGCGTAAGGTGAAACATGATGGCAC
TATTTCCGTTAATAATAAGCTGTATGAAGTACCACCCCGGTTTATTGGCCAAAAAATTGAAGTCCGTTTTGATGAAGATG
TGGTTTATGTTTATGAAAATGGCATAGCTGTAGATAAAGCTATCCCGGTTAATTTCGCTGATAATGCCAAGGTAAAACGC
CATCGCTCGCTTTCTTTTCAGGCTATGCTGGCGGGAAAGGAGGAGTAA

Upstream 100 bases:

>100_bases
TGCTTCCACAAACCTTTTGCGTGGTATTCTTTTTCCTCCCAGGTTAAAATGGTCTCATGGATGGTTAACCGGTTAGCCTC
CTTCTAAAAGGAGGGTTTTT

Downstream 100 bases:

>100_bases
TCGGTGTATCGAGCTTTTTATTCTTTGACCAAAGCCCCTTTTACTAAAGAAATCAAAACCGCTGATTCTTTCCTGTCAAC
TTCTTTTTCCGAAACGATGG

Product: ISChy6, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MDEKVREKVALFRYGLLAPVLNGQVSNQQEYFAQICSKVHEVPFYGPKEFTPKTLAGWLLSYRRFGFDGLKPKIRSDRGK
HRVLSREQEEYLIALRKELRDLPASVFYERLVDRGEILPKDVSYATVYRLLKKYGLVGNESPKSPERKRFSYDTVNVLWQ
GDMSVGPYIVQNGKKLKTFLFAFIDDCSRLVPFAQFFFSEKFESLRTVFKEALIRRGIPKMVYVDNGKIYRSDTFQIACA
SLGIILTHTQPYDAPSKGKIERFFGTVKTRFFPLLKEKPASSLEELNRRFWQWLEEDYHRKVHASLGMTPLDVYLSQVSQ
VRMIDDPASLDPLFLKREMRKVKHDGTISVNNKLYEVPPRFIGQKIEVRFDEDVVYVYENGIAVDKAIPVNFADNAKVKR
HRSLSFQAMLAGKEE

Sequences:

>Translated_415_residues
MDEKVREKVALFRYGLLAPVLNGQVSNQQEYFAQICSKVHEVPFYGPKEFTPKTLAGWLLSYRRFGFDGLKPKIRSDRGK
HRVLSREQEEYLIALRKELRDLPASVFYERLVDRGEILPKDVSYATVYRLLKKYGLVGNESPKSPERKRFSYDTVNVLWQ
GDMSVGPYIVQNGKKLKTFLFAFIDDCSRLVPFAQFFFSEKFESLRTVFKEALIRRGIPKMVYVDNGKIYRSDTFQIACA
SLGIILTHTQPYDAPSKGKIERFFGTVKTRFFPLLKEKPASSLEELNRRFWQWLEEDYHRKVHASLGMTPLDVYLSQVSQ
VRMIDDPASLDPLFLKREMRKVKHDGTISVNNKLYEVPPRFIGQKIEVRFDEDVVYVYENGIAVDKAIPVNFADNAKVKR
HRSLSFQAMLAGKEE
>Mature_415_residues
MDEKVREKVALFRYGLLAPVLNGQVSNQQEYFAQICSKVHEVPFYGPKEFTPKTLAGWLLSYRRFGFDGLKPKIRSDRGK
HRVLSREQEEYLIALRKELRDLPASVFYERLVDRGEILPKDVSYATVYRLLKKYGLVGNESPKSPERKRFSYDTVNVLWQ
GDMSVGPYIVQNGKKLKTFLFAFIDDCSRLVPFAQFFFSEKFESLRTVFKEALIRRGIPKMVYVDNGKIYRSDTFQIACA
SLGIILTHTQPYDAPSKGKIERFFGTVKTRFFPLLKEKPASSLEELNRRFWQWLEEDYHRKVHASLGMTPLDVYLSQVSQ
VRMIDDPASLDPLFLKREMRKVKHDGTISVNNKLYEVPPRFIGQKIEVRFDEDVVYVYENGIAVDKAIPVNFADNAKVKR
HRSLSFQAMLAGKEE

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=338, Percent_Identity=25.7396449704142, Blast_Score=88, Evalue=8e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 48204; Mature: 48204

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEKVREKVALFRYGLLAPVLNGQVSNQQEYFAQICSKVHEVPFYGPKEFTPKTLAGWLL
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
SYRRFGFDGLKPKIRSDRGKHRVLSREQEEYLIALRKELRDLPASVFYERLVDRGEILPK
HHHHHCCCCCCCCHHCCCCHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
DVSYATVYRLLKKYGLVGNESPKSPERKRFSYDTVNVLWQGDMSVGPYIVQNGKKLKTFL
CCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCEEECCCCHHHHHH
FAFIDDCSRLVPFAQFFFSEKFESLRTVFKEALIRRGIPKMVYVDNGKIYRSDTFQIACA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCEEHHH
SLGIILTHTQPYDAPSKGKIERFFGTVKTRFFPLLKEKPASSLEELNRRFWQWLEEDYHR
HCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
KVHASLGMTPLDVYLSQVSQVRMIDDPASLDPLFLKREMRKVKHDGTISVNNKLYEVPPR
HHHHHCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCEEEECCEEEECCHH
FIGQKIEVRFDEDVVYVYENGIAVDKAIPVNFADNAKVKRHRSLSFQAMLAGKEE
HCCCEEEEEECCCEEEEEECCEEECCCCCCCCCCCCHHHHHHCCCHHEECCCCCC
>Mature Secondary Structure
MDEKVREKVALFRYGLLAPVLNGQVSNQQEYFAQICSKVHEVPFYGPKEFTPKTLAGWLL
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
SYRRFGFDGLKPKIRSDRGKHRVLSREQEEYLIALRKELRDLPASVFYERLVDRGEILPK
HHHHHCCCCCCCCHHCCCCHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
DVSYATVYRLLKKYGLVGNESPKSPERKRFSYDTVNVLWQGDMSVGPYIVQNGKKLKTFL
CCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCEEECCCCHHHHHH
FAFIDDCSRLVPFAQFFFSEKFESLRTVFKEALIRRGIPKMVYVDNGKIYRSDTFQIACA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCEEHHH
SLGIILTHTQPYDAPSKGKIERFFGTVKTRFFPLLKEKPASSLEELNRRFWQWLEEDYHR
HCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
KVHASLGMTPLDVYLSQVSQVRMIDDPASLDPLFLKREMRKVKHDGTISVNNKLYEVPPR
HHHHHCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCEEEECCEEEECCHH
FIGQKIEVRFDEDVVYVYENGIAVDKAIPVNFADNAKVKRHRSLSFQAMLAGKEE
HCCCEEEEEECCCEEEEEECCEEECCCCCCCCCCCCHHHHHHCCCHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]