Click here to switch to the map view.

The map label for this gene is nucH2

Identifier: 78043424

GI number: 78043424

Start: 1515428

End: 1516243

Strand: Direct

Name: nucH2

Synonym: CHY_1699

Alternate gene names: NA

Gene position: 1515428-1516243 (Clockwise)

Preceding gene: 78043809

Following gene: 78044317

Centisome position: 63.1

GC content: 33.58

Gene sequence:

>816_bases
ATGAGTTCTATAGAAAAAATTAAACAATCATTAAAAGAACAAAAAAGTTTATTAATTGGATTATGTTTTTTTATTTTGGT
ATACGTTATAGGCTTAACGCACCCCCAAACAATTCAAGAAAAAGAAGACAATGCCGTTAATAAGACAACTACAACCCAAA
AACAAGAACAGCAATCTACCTCCGAATTTGTTCCTGCTATAGTTGTCAGAATTCATGACGGTGAAACAATTACAGTACAG
CTACCTGATGGAGCTAAGGAGAAAGTTAGACTAATTGGTATTGATGCTCCCGTTGAAGATACTCTTATAAATTTAAGCAG
TAAAGATCCAGCAAAGTTAACTTTAGCTGATTTATGGGGTAAAACTGTTTATCTTGAAAAAGATGCTGTTAATAGAGATA
GCAATGGTTACTTGCTCCGTTATGTTTGGTTAGAAATACCGGATATTAAACCAAATGTAATAAGTGATTCCGAAGTACAG
AAAAAAATGGTTAATGCCATTCTCTTATTAAATGGGTATGGCAAATATATTAGCACTTCGCCAAATAAAAAATATGAAAG
TGAATTAGCGCGAAGCGAATTTGAAGCTTTTGCTCATAAGAAAGGAATATGGTCAATAAGTACAGCACCACATGCCCCAC
CCGATTCAAATAAAAGCGTTAAAAAACAAAATATTATAGTTTATGTGACATTAACAGGTCATAAATACCATCGTAGCTGG
TGCCGATATTTGAAATACAGTAAAATCCCAATTAGTCTTGGTGATGCCATTAATGAAGGATATGAGCCTTGTAGTGTGTG
TAATCCACCCCAATAA

Upstream 100 bases:

>100_bases
GGTTTACTTTAAATCGAGAGAAGCAGCTATAAATGCCGGATATGTTCCTTGTAAAGTATGTAATCCATAGCCTTAAGGCA
AAATCCTTGGGGGTATTTAG

Downstream 100 bases:

>100_bases
ACTATCTTGTTGGCTTGTTTAAAGAAAAAAGTAGATAAATTGCAGGAATAAATATGCTAATTAGGAGGTAACAATGCCCA
CGTTAAGCTTAATGGAATAT

Product: prophage LambdaCh01, thermonuclease

Products: NA

Alternate protein names: Thermonuclease; Prophage; Beta-Lactamase-Like Protein; Thermonuclease Family Protein; Micrococcal Nuclease-Like Protein; N-Acetylmuramoyl-L-Alanine Amidase; Copper Amine Oxidase Domain-Containing Protein

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSSIEKIKQSLKEQKSLLIGLCFFILVYVIGLTHPQTIQEKEDNAVNKTTTTQKQEQQSTSEFVPAIVVRIHDGETITVQ
LPDGAKEKVRLIGIDAPVEDTLINLSSKDPAKLTLADLWGKTVYLEKDAVNRDSNGYLLRYVWLEIPDIKPNVISDSEVQ
KKMVNAILLLNGYGKYISTSPNKKYESELARSEFEAFAHKKGIWSISTAPHAPPDSNKSVKKQNIIVYVTLTGHKYHRSW
CRYLKYSKIPISLGDAINEGYEPCSVCNPPQ

Sequences:

>Translated_271_residues
MSSIEKIKQSLKEQKSLLIGLCFFILVYVIGLTHPQTIQEKEDNAVNKTTTTQKQEQQSTSEFVPAIVVRIHDGETITVQ
LPDGAKEKVRLIGIDAPVEDTLINLSSKDPAKLTLADLWGKTVYLEKDAVNRDSNGYLLRYVWLEIPDIKPNVISDSEVQ
KKMVNAILLLNGYGKYISTSPNKKYESELARSEFEAFAHKKGIWSISTAPHAPPDSNKSVKKQNIIVYVTLTGHKYHRSW
CRYLKYSKIPISLGDAINEGYEPCSVCNPPQ
>Mature_270_residues
SSIEKIKQSLKEQKSLLIGLCFFILVYVIGLTHPQTIQEKEDNAVNKTTTTQKQEQQSTSEFVPAIVVRIHDGETITVQL
PDGAKEKVRLIGIDAPVEDTLINLSSKDPAKLTLADLWGKTVYLEKDAVNRDSNGYLLRYVWLEIPDIKPNVISDSEVQK
KMVNAILLLNGYGKYISTSPNKKYESELARSEFEAFAHKKGIWSISTAPHAPPDSNKSVKKQNIIVYVTLTGHKYHRSWC
RYLKYSKIPISLGDAINEGYEPCSVCNPPQ

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30479; Mature: 30348

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIEKIKQSLKEQKSLLIGLCFFILVYVIGLTHPQTIQEKEDNAVNKTTTTQKQEQQST
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHH
SEFVPAIVVRIHDGETITVQLPDGAKEKVRLIGIDAPVEDTLINLSSKDPAKLTLADLWG
HHCCEEEEEEEECCCEEEEECCCCCCCCEEEEECCCCCHHHEEECCCCCCCEEEHHHHCC
KTVYLEKDAVNRDSNGYLLRYVWLEIPDIKPNVISDSEVQKKMVNAILLLNGYGKYISTS
CEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEECCCCEEECC
PNKKYESELARSEFEAFAHKKGIWSISTAPHAPPDSNKSVKKQNIIVYVTLTGHKYHRSW
CCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHH
CRYLKYSKIPISLGDAINEGYEPCSVCNPPQ
HHHHHCCCCCEECCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SSIEKIKQSLKEQKSLLIGLCFFILVYVIGLTHPQTIQEKEDNAVNKTTTTQKQEQQST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHH
SEFVPAIVVRIHDGETITVQLPDGAKEKVRLIGIDAPVEDTLINLSSKDPAKLTLADLWG
HHCCEEEEEEEECCCEEEEECCCCCCCCEEEEECCCCCHHHEEECCCCCCCEEEHHHHCC
KTVYLEKDAVNRDSNGYLLRYVWLEIPDIKPNVISDSEVQKKMVNAILLLNGYGKYISTS
CEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEECCCCEEECC
PNKKYESELARSEFEAFAHKKGIWSISTAPHAPPDSNKSVKKQNIIVYVTLTGHKYHRSW
CCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHH
CRYLKYSKIPISLGDAINEGYEPCSVCNPPQ
HHHHHCCCCCEECCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA