| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is dnaB [H]
Identifier: 78043236
GI number: 78043236
Start: 32795
End: 34126
Strand: Direct
Name: dnaB [H]
Synonym: CHY_0041
Alternate gene names: 78043236
Gene position: 32795-34126 (Clockwise)
Preceding gene: 78043822
Following gene: 78044629
Centisome position: 1.37
GC content: 46.32
Gene sequence:
>1332_bases ATGAACGAGCTTTTAATGCTACCTCCGCATAATATTGATGCCGAACAGGCGGTTCTTGGGACCATATTAAGTAATGGTGA AAGCCTTTATAAAGTCATTGAAATCTTAAAACCCGAGGATTTTTACCGGGAATCCCATAAACTTCTTTACCAGGTAATGC TTGAATTAAATGAAAAGGGCGAACCGATTACCATTTTAACGGTAACCGAGGCCTTAAAACAAAAAGGTGACCTGGAGCGG GCGGGGGGAGTTTCGTATATTGCTTCCCTTTTAGCCATGGCAGTGCCGGAAGCTACCCTGGAAAGCCATGCCGAGATAAT TGAAGAAAAAGCAGTTTTGCGGCATTTAATAGACCTTTCGGAGAAAATAAAAAGGCTTAGTTATACTGAAAAAGATGCGG AAAGCATTTTAGAAGAGGCGGAACGACTGGTTTTAGAAGTAGGAATGAAACGGAATCAGCAGTCGTATACCGCGGTTCGA GAAATTGTTTACGACGCCATCGAACGAATTGAGTTTTTATACCAGAACCGGGGCAATATTACCGGGATTCCGACTCATTT TTACGATTTAGACCGGATGTTAAACGGCTTGCAAAAAAGCGACCTGATTATTGTGGCCGCCCGGCCGGCGATGGGAAAAA CCAGTTTTTGTCTTAATGTCGCCCAAAATGCTGCGATTAAAAGCGGAGTGCCGGTGGCGGTTTTTAGCCTGGAAATGTCC AAAGAGCAGCTGGTGACCAGGATGCTGACCTCCGAAGCCATGGTAGACCAGCACCGGGTAAGGGCCGGGGAGCTTTCCGA TGAAGATTGGTTGCGGTTAACCGAAGTGGCGGGAATATTAGCTAAAGCTCCGATTTACATTGACGATACTCCCGGTTTAA CGATACGCGAGCTCCGGGCCAGAGCAAGGAGGCTTAAGCAGGAAAAAAACATCGGGTTAATTATAATTGACTACCTGCAA CTTTTAAACGGCAGTCGCCGGGCCGAAAGCCGGCAGCAGGAAATTTCCGAAATCTCCCGGGCCTTAAAAGGGCTGGCGAA AGAGTTAGACTTGCCGGTGGTGGCGTTATCCCAGCTTTCCCGGGCGGTGGAGGCGCGGCAGGATAAAAGGCCTATTATGT CGGATTTAAGGGAATCCGGTTCGTTAGAGCAGGATGCCGATATTGTCATGTTTATCTACCGGGAAGAGTATTACAAGCCC GATACGGAAAAGAAAAGCATAGCGGAAATTATCATTGCCAAGCAAAGAAACGGCCCAACGGGGATTGTGGAGCTGGGATT TTTAAAAGAATTCACCAAATTTGTTAATTTAGCCAAAAAGTATACGGAATAA
Upstream 100 bases:
>100_bases GGGGATAAAGGTTGTGCCGGTAAAGACGGTAGAAGAAGTAGTGGAAATTGCTACCCAAAAACCCCTTTTAACCACCAGGG CGGTGTAGGAGGATTTTTTT
Downstream 100 bases:
>100_bases TTTTTTTGGCAAAACTTGACGATGGAAAGATAATAGCGGTATACTAAATTTAAAACGCAGCATTAGACGGGACAAAGTTA CTTTGTCCCGCTTTTGCGTT
Product: replicative DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MNELLMLPPHNIDAEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKGEPITILTVTEALKQKGDLER AGGVSYIASLLAMAVPEATLESHAEIIEEKAVLRHLIDLSEKIKRLSYTEKDAESILEEAERLVLEVGMKRNQQSYTAVR EIVYDAIERIEFLYQNRGNITGIPTHFYDLDRMLNGLQKSDLIIVAARPAMGKTSFCLNVAQNAAIKSGVPVAVFSLEMS KEQLVTRMLTSEAMVDQHRVRAGELSDEDWLRLTEVAGILAKAPIYIDDTPGLTIRELRARARRLKQEKNIGLIIIDYLQ LLNGSRRAESRQQEISEISRALKGLAKELDLPVVALSQLSRAVEARQDKRPIMSDLRESGSLEQDADIVMFIYREEYYKP DTEKKSIAEIIIAKQRNGPTGIVELGFLKEFTKFVNLAKKYTE
Sequences:
>Translated_443_residues MNELLMLPPHNIDAEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKGEPITILTVTEALKQKGDLER AGGVSYIASLLAMAVPEATLESHAEIIEEKAVLRHLIDLSEKIKRLSYTEKDAESILEEAERLVLEVGMKRNQQSYTAVR EIVYDAIERIEFLYQNRGNITGIPTHFYDLDRMLNGLQKSDLIIVAARPAMGKTSFCLNVAQNAAIKSGVPVAVFSLEMS KEQLVTRMLTSEAMVDQHRVRAGELSDEDWLRLTEVAGILAKAPIYIDDTPGLTIRELRARARRLKQEKNIGLIIIDYLQ LLNGSRRAESRQQEISEISRALKGLAKELDLPVVALSQLSRAVEARQDKRPIMSDLRESGSLEQDADIVMFIYREEYYKP DTEKKSIAEIIIAKQRNGPTGIVELGFLKEFTKFVNLAKKYTE >Mature_443_residues MNELLMLPPHNIDAEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKGEPITILTVTEALKQKGDLER AGGVSYIASLLAMAVPEATLESHAEIIEEKAVLRHLIDLSEKIKRLSYTEKDAESILEEAERLVLEVGMKRNQQSYTAVR EIVYDAIERIEFLYQNRGNITGIPTHFYDLDRMLNGLQKSDLIIVAARPAMGKTSFCLNVAQNAAIKSGVPVAVFSLEMS KEQLVTRMLTSEAMVDQHRVRAGELSDEDWLRLTEVAGILAKAPIYIDDTPGLTIRELRARARRLKQEKNIGLIIIDYLQ LLNGSRRAESRQQEISEISRALKGLAKELDLPVVALSQLSRAVEARQDKRPIMSDLRESGSLEQDADIVMFIYREEYYKP DTEKKSIAEIIIAKQRNGPTGIVELGFLKEFTKFVNLAKKYTE
Specific function: Participates In Initiation And Elongation During Chromosome Replication; It Exhibits DNA-Dependent ATPase Activity And Contains Distinct Active Sites For ATP Binding, DNA Binding, And Interaction With DNAc Protein, Primase, And Other Prepriming Proteins.
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=441, Percent_Identity=45.8049886621315, Blast_Score=386, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007692 - InterPro: IPR007694 - InterPro: IPR007693 - InterPro: IPR016136 [H]
Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 50088; Mature: 50088
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNELLMLPPHNIDAEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKG CCCCEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC EPITILTVTEALKQKGDLERAGGVSYIASLLAMAVPEATLESHAEIIEEKAVLRHLIDLS CCEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH EKIKRLSYTEKDAESILEEAERLVLEVGMKRNQQSYTAVREIVYDAIERIEFLYQNRGNI HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC TGIPTHFYDLDRMLNGLQKSDLIIVAARPAMGKTSFCLNVAQNAAIKSGVPVAVFSLEMS CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHH KEQLVTRMLTSEAMVDQHRVRAGELSDEDWLRLTEVAGILAKAPIYIDDTPGLTIRELRA HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHH RARRLKQEKNIGLIIIDYLQLLNGSRRAESRQQEISEISRALKGLAKELDLPVVALSQLS HHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH RAVEARQDKRPIMSDLRESGSLEQDADIVMFIYREEYYKPDTEKKSIAEIIIAKQRNGPT HHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHCCCCCC GIVELGFLKEFTKFVNLAKKYTE CHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNELLMLPPHNIDAEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKG CCCCEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC EPITILTVTEALKQKGDLERAGGVSYIASLLAMAVPEATLESHAEIIEEKAVLRHLIDLS CCEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH EKIKRLSYTEKDAESILEEAERLVLEVGMKRNQQSYTAVREIVYDAIERIEFLYQNRGNI HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC TGIPTHFYDLDRMLNGLQKSDLIIVAARPAMGKTSFCLNVAQNAAIKSGVPVAVFSLEMS CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHH KEQLVTRMLTSEAMVDQHRVRAGELSDEDWLRLTEVAGILAKAPIYIDDTPGLTIRELRA HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHH RARRLKQEKNIGLIIIDYLQLLNGSRRAESRQQEISEISRALKGLAKELDLPVVALSQLS HHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH RAVEARQDKRPIMSDLRESGSLEQDADIVMFIYREEYYKPDTEKKSIAEIIIAKQRNGPT HHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHCCCCCC GIVELGFLKEFTKFVNLAKKYTE CHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 1312531 [H]