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The map label for this gene is yqiR [H]

Identifier: 78043131

GI number: 78043131

Start: 1216772

End: 1218493

Strand: Direct

Name: yqiR [H]

Synonym: CHY_1359

Alternate gene names: 78043131

Gene position: 1216772-1218493 (Clockwise)

Preceding gene: 78043874

Following gene: 78044888

Centisome position: 50.67

GC content: 35.54

Gene sequence:

>1722_bases
GTGGCGATAAATCCCATAAATCATTTAAGTCTTTTAAACATTCTTGATTCAATTCATAATGCTATTGTAGCCATCGACGA
AGAAGGAAAGGTTATTATTTTTAATAAAGCCAGTGAAAGAGTTTTTAACTATCCTGCAAAAAAAGCTTTGGGAAAAAATA
TAAATGAAGTCTTGCCGTTTAGCGGGCTTAATAAGGTGCTGAAAACTGGCGAATCCCATATTGGTCGCAAATTTAAAATT
GGGGATAACTTGTATGTAGTTAACCGAACCCCACTTTATTACAAGGGTAAGATTATTGGTGCTATTGGGGTAGCTCAGGA
AATTAATGAACTAAAAAACATTGCCGATGAATTGGAAAATGTTTTGGCTTTAAAACAAACTTTAGAAACCATCCTCGAAG
CGGGCCAGGAAGGATACATGGTTCTGGATTTAGATAAAACGGTCACCCACGCCAATAAAGCAATTGCTGACCTCTTTGGC
CTAAAGTTAAGCGATATCGTCAATAAACCTATTAACTCCTTAACCGCAAATCCTTTCTTTTGTGAATTACCAGAATCCGC
CGACGATATAAAAACAGAAGTTGTAGAAATTAACGGCAGGCAAGTGGTAGCTTTTAAATACCCGATAGTAAAAGATTACA
AACTTTATGGAGGAGTAATCAAAGTTATTTTTCAAGAAGTCAGTGACTTATTAGCCTTGGCTGAAAAGGTTAATCAATTA
AATTCCGAATTATCGTATTATAAAAACGAATTAACTAAATATACGTCAAAACAATTTACCGAAAATAAAATAATCGGCAA
TCATCCCTCTATTGTACGCTTAAAAGAAATAATTAAAAAGATAGCTCCTTATAACACCACCGTTTTAATCCGGGGGGAAA
GTGGAACCGGAAAAGAATTAGTTGCCCATGCCTTACACGTGGAGAGCGGAAGACCGGGTAGCTTTATAAAGGTTAACTGC
GCCGCAATTCCGGAAAATCTCTTCGAAGCAGAGCTTTTTGGTTATGTCGAAGGAGCGTTCACCGGAGCTAAAAAAGGAGG
ACAAATCGGTAAGTTTGAATTAGCAAATAATGGTACAATATTTTTGGATGAAATAGGGGATATGCCCTTAACTATGCAGG
CTAAACTTTTAAGGGTACTGCAGGAAAAAGAAGTTGAACGGCTGGGAGACCGAAAGACAAGAAAAATTAACGTTAGGGTA
ATTGCCGCAACCAATCAAAACTTAGAAGAACTTATTAAAAAGAAGAAATTTCGGGAAGATCTTTACTACCGGCTTAATGT
AATTTCGTTATACGTACCAGCTCTAAGGGAAAGGATTGAAGATTTACCTTTATTAATAAAATATTTCATAGAAAAATTTA
ATAAAGAATACGGAACCAATGTTACGGGTATTTCTCCGGAAGTTATGGATATATTTATGAATTATTCCTGGCCGGGAAAT
ATCCGAGAACTTGAAAATGTCCTGGAAAGGTGTTTTAATTTAGTTGAGGGCAAAGTCATCGAAAAAAAGTATCTACCACC
GTATATTCTGGGAGAAGAACTAAAAAATAAAGAATTTCCATTAGGACAAAGTCTTACAAATTTACTTGAGGCATATGAAA
AAGAATTAATTAAGGCAGCTCTTTTAAAAGCTAAAGGCAATAAAAGTAAAGCGGCCAATCTTTTGGGAATATCCCGCCAA
TGGCTTCACAAAAGACTAAAATATTTTAACCTTTTACCTTAA

Upstream 100 bases:

>100_bases
ATGGAGCGTTTTACCTTGGGAGGATTTGGTAAAAACAAAACCGAATTACATTTTAAATTCTTTTGACGACTTGTTAAAAA
TAACCGGGGTGGAGTAAACT

Downstream 100 bases:

>100_bases
AAAATTTTTGGAAAGGACGTAAAAGACAATGTTCAGCGAAACTGAAAAAGAAACAACAAAAAGTTTTTCCTGGAAAAATG
AAATAAAAGAATTCATTTCA

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 572

Protein sequence:

>573_residues
MAINPINHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPFSGLNKVLKTGESHIGRKFKI
GDNLYVVNRTPLYYKGKIIGAIGVAQEINELKNIADELENVLALKQTLETILEAGQEGYMVLDLDKTVTHANKAIADLFG
LKLSDIVNKPINSLTANPFFCELPESADDIKTEVVEINGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQL
NSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRPGSFIKVNC
AAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRV
IAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGN
IRELENVLERCFNLVEGKVIEKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQ
WLHKRLKYFNLLP

Sequences:

>Translated_573_residues
MAINPINHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPFSGLNKVLKTGESHIGRKFKI
GDNLYVVNRTPLYYKGKIIGAIGVAQEINELKNIADELENVLALKQTLETILEAGQEGYMVLDLDKTVTHANKAIADLFG
LKLSDIVNKPINSLTANPFFCELPESADDIKTEVVEINGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQL
NSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRPGSFIKVNC
AAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRV
IAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGN
IRELENVLERCFNLVEGKVIEKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQ
WLHKRLKYFNLLP
>Mature_572_residues
AINPINHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPFSGLNKVLKTGESHIGRKFKIG
DNLYVVNRTPLYYKGKIIGAIGVAQEINELKNIADELENVLALKQTLETILEAGQEGYMVLDLDKTVTHANKAIADLFGL
KLSDIVNKPINSLTANPFFCELPESADDIKTEVVEINGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQLN
SELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRPGSFIKVNCA
AIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRVI
AATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGNI
RELENVLERCFNLVEGKVIEKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQW
LHKRLKYFNLLP

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=375, Percent_Identity=43.7333333333333, Blast_Score=294, Evalue=8e-81,
Organism=Escherichia coli, GI1789233, Length=321, Percent_Identity=44.8598130841121, Blast_Score=281, Evalue=7e-77,
Organism=Escherichia coli, GI1790437, Length=321, Percent_Identity=46.1059190031153, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1789087, Length=349, Percent_Identity=42.4068767908309, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI87082117, Length=367, Percent_Identity=38.4196185286104, Blast_Score=251, Evalue=6e-68,
Organism=Escherichia coli, GI1790299, Length=362, Percent_Identity=38.121546961326, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1788905, Length=318, Percent_Identity=41.8238993710692, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI87082152, Length=320, Percent_Identity=40.3125, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI1786524, Length=400, Percent_Identity=36.5, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI1787583, Length=440, Percent_Identity=32.0454545454545, Blast_Score=204, Evalue=2e-53,
Organism=Escherichia coli, GI87081872, Length=319, Percent_Identity=38.5579937304075, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI1789828, Length=359, Percent_Identity=28.4122562674095, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081858, Length=308, Percent_Identity=29.8701298701299, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 64631; Mature: 64500

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINPINHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPF
CCCCCHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCHHHHCCCHHHHHCCCHHHHCCC
SGLNKVLKTGESHIGRKFKIGDNLYVVNRTPLYYKGKIIGAIGVAQEINELKNIADELEN
CHHHHHHHCCHHHCCCEEEECCCEEEEECCCEEECCEEEEHHHHHHHHHHHHHHHHHHHH
VLALKQTLETILEAGQEGYMVLDLDKTVTHANKAIADLFGLKLSDIVNKPINSLTANPFF
HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCCCEE
CELPESADDIKTEVVEINGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQL
EECCCCHHHHHEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKEL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
VAHALHVESGRPGSFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTI
HHHHHHCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEE
FLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFRED
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH
LYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
IRELENVLERCFNLVEGKVIEKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAA
HHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LLKAKGNKSKAANLLGISRQWLHKRLKYFNLLP
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AINPINHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPF
CCCCHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCHHHHCCCHHHHHCCCHHHHCCC
SGLNKVLKTGESHIGRKFKIGDNLYVVNRTPLYYKGKIIGAIGVAQEINELKNIADELEN
CHHHHHHHCCHHHCCCEEEECCCEEEEECCCEEECCEEEEHHHHHHHHHHHHHHHHHHHH
VLALKQTLETILEAGQEGYMVLDLDKTVTHANKAIADLFGLKLSDIVNKPINSLTANPFF
HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCCCEE
CELPESADDIKTEVVEINGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQL
EECCCCHHHHHEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKEL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
VAHALHVESGRPGSFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTI
HHHHHHCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEE
FLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFRED
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH
LYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
IRELENVLERCFNLVEGKVIEKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAA
HHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LLKAKGNKSKAANLLGISRQWLHKRLKYFNLLP
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]