| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is trxA [H]
Identifier: 78043049
GI number: 78043049
Start: 2139648
End: 2139977
Strand: Direct
Name: trxA [H]
Synonym: CHY_2390
Alternate gene names: 78043049
Gene position: 2139648-2139977 (Clockwise)
Preceding gene: 78044856
Following gene: 78043612
Centisome position: 89.1
GC content: 43.03
Gene sequence:
>330_bases ATGGCGGGAAACATAATTGAGCTAAACAAAGACAATTTTGAAGAAGAAGTTTTAAAAAGCGAGCTTCCGGTTCTGGTGGA CTTCTGGGGTCCCCGGTGCGTACCCTGCATGGGTTTAATGCCGGTAGTAGAAGAATTGGCCGAAATCTATGCGGGTAAAA TGAAGTTTACCAAATTAAACACTGCCGAAAACCGGAGGCTTGCCATTCAGCTTAAAGTTATGAGCCTTCCTACTTTCCAG TTTTATAAAAACGGCGAACTTGTAGACCAGCTACAAGGTAATTTTGGCCGCGAAGAAATTGAAGAAAAAATTCGGGCCAT TATCGGCTAA
Upstream 100 bases:
>100_bases TGTTACGGCAGGTAGTAACTGCCGCTGCTGACGGTGCTATTGCTGCTTACCATGCGGAAAAATATCTTGAAGAATGTACC GAGTAAAGGAGGTGATAAAC
Downstream 100 bases:
>100_bases GGAGGGATAAAATGCGGCTTACCCTTGGGAAAATTAACATTAAAGGGCTGGAATTTGGCCCCAGTACCCGGGTCGAAAAC GGAGTTCTTTACGTTAATAA
Product: putative thioredoxin
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MAGNIIELNKDNFEEEVLKSELPVLVDFWGPRCVPCMGLMPVVEELAEIYAGKMKFTKLNTAENRRLAIQLKVMSLPTFQ FYKNGELVDQLQGNFGREEIEEKIRAIIG
Sequences:
>Translated_109_residues MAGNIIELNKDNFEEEVLKSELPVLVDFWGPRCVPCMGLMPVVEELAEIYAGKMKFTKLNTAENRRLAIQLKVMSLPTFQ FYKNGELVDQLQGNFGREEIEEKIRAIIG >Mature_108_residues AGNIIELNKDNFEEEVLKSELPVLVDFWGPRCVPCMGLMPVVEELAEIYAGKMKFTKLNTAENRRLAIQLKVMSLPTFQF YKNGELVDQLQGNFGREEIEEKIRAIIG
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=98, Percent_Identity=33.6734693877551, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1788936, Length=79, Percent_Identity=41.7721518987342, Blast_Score=84, Evalue=2e-18, Organism=Escherichia coli, GI87082331, Length=106, Percent_Identity=34.9056603773585, Blast_Score=82, Evalue=7e-18, Organism=Escherichia coli, GI87081747, Length=106, Percent_Identity=33.9622641509434, Blast_Score=67, Evalue=3e-13, Organism=Caenorhabditis elegans, GI212646193, Length=99, Percent_Identity=30.3030303030303, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: 1.8.1.8 [C]
Molecular weight: Translated: 12449; Mature: 12318
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGNIIELNKDNFEEEVLKSELPVLVDFWGPRCVPCMGLMPVVEELAEIYAGKMKFTKLN CCCCEEEECCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC TAENRRLAIQLKVMSLPTFQFYKNGELVDQLQGNFGREEIEEKIRAIIG CCCCCEEEEEEEECCCCCEEECCCCCHHHHHCCCCCHHHHHHHHHHHCC >Mature Secondary Structure AGNIIELNKDNFEEEVLKSELPVLVDFWGPRCVPCMGLMPVVEELAEIYAGKMKFTKLN CCCEEEECCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC TAENRRLAIQLKVMSLPTFQFYKNGELVDQLQGNFGREEIEEKIRAIIG CCCCCEEEEEEEECCCCCEEECCCCCHHHHHCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8223622; 1995593 [H]