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The map label for this gene is ybeY [C]

Identifier: 78043035

GI number: 78043035

Start: 369527

End: 369958

Strand: Direct

Name: ybeY [C]

Synonym: CHY_0427

Alternate gene names: 78043035

Gene position: 369527-369958 (Clockwise)

Preceding gene: 78043665

Following gene: 78045026

Centisome position: 15.39

GC content: 40.74

Gene sequence:

>432_bases
TTGACGGAAATTACCAATCTTCAGGATAAAGTGGACGTGGATGAGACTTTGTTAAATATAATTACCCAGGCTGTGAGTTT
AACATTAAACGAGGAAGGACGCGCAGGGGTAGTAAGCATTGCGCTGGTGGATAACAATTACATTCAGTCTTTAAACCGGG
AATACCGCCAAAAGGATGTTCCAACGGATGTTTTATCTTTTCCCCTGGCAGATGATAAAGATGATGAAGTCTTAGGGGAT
GTGGTGATATCTTTAGAAAAGGCCGCGGAACAAGCAAAAGAATACGGTCATAGTTTTTTTAGGGAAGTGGCGTTTTTAAC
GGTGCATGGGGTTTTACATTTACTTGGGCATGACCATTATGAAGAAGAAGAAACCCGTATTATGCGGGAAAAAGAAGAAA
AAATTTTAAGTGCTCTGGGATTGGAGCGTTAA

Upstream 100 bases:

>100_bases
ACATTGCTCAAGCCTTTGATAAAGTATTATCGGGAATTTTCCATAACCGGGTGGAATATCCGGATATAAACGTGGAAGCT
CTCAGAAAGGAGAAAAAATC

Downstream 100 bases:

>100_bases
TATGCGGCGAAGCTTGAAAGAAAGCTTTAGCTATGCTTTTTGGGGCTTAATTTACAGTTTACGCACCCAGAGAAACATGA
AAATTCACTTTTTAGCGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTEITNLQDKVDVDETLLNIITQAVSLTLNEEGRAGVVSIALVDNNYIQSLNREYRQKDVPTDVLSFPLADDKDDEVLGD
VVISLEKAAEQAKEYGHSFFREVAFLTVHGVLHLLGHDHYEEEETRIMREKEEKILSALGLER

Sequences:

>Translated_143_residues
MTEITNLQDKVDVDETLLNIITQAVSLTLNEEGRAGVVSIALVDNNYIQSLNREYRQKDVPTDVLSFPLADDKDDEVLGD
VVISLEKAAEQAKEYGHSFFREVAFLTVHGVLHLLGHDHYEEEETRIMREKEEKILSALGLER
>Mature_142_residues
TEITNLQDKVDVDETLLNIITQAVSLTLNEEGRAGVVSIALVDNNYIQSLNREYRQKDVPTDVLSFPLADDKDDEVLGDV
VISLEKAAEQAKEYGHSFFREVAFLTVHGVLHLLGHDHYEEEETRIMREKEEKILSALGLER

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=115, Percent_Identity=40, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1786880, Length=107, Percent_Identity=42.9906542056075, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CARHZ (Q3AEZ6)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_359288.1
- ProteinModelPortal:   Q3AEZ6
- STRING:   Q3AEZ6
- GeneID:   3726450
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0427
- NMPDR:   fig|246194.3.peg.760
- TIGR:   CHY_0427
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   ETLAMEK
- BioCyc:   CHYD246194:CHY_0427-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16210; Mature: 16079

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEITNLQDKVDVDETLLNIITQAVSLTLNEEGRAGVVSIALVDNNYIQSLNREYRQKDV
CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCC
PTDVLSFPLADDKDDEVLGDVVISLEKAAEQAKEYGHSFFREVAFLTVHGVLHLLGHDHY
CHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EEEETRIMREKEEKILSALGLER
CHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TEITNLQDKVDVDETLLNIITQAVSLTLNEEGRAGVVSIALVDNNYIQSLNREYRQKDV
CCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCC
PTDVLSFPLADDKDDEVLGDVVISLEKAAEQAKEYGHSFFREVAFLTVHGVLHLLGHDHY
CHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EEEETRIMREKEEKILSALGLER
CHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA