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The map label for this gene is ybiR [C]

Identifier: 78042995

GI number: 78042995

Start: 1804709

End: 1805980

Strand: Direct

Name: ybiR [C]

Synonym: CHY_2020

Alternate gene names: 78042995

Gene position: 1804709-1805980 (Clockwise)

Preceding gene: 78044124

Following gene: 78045018

Centisome position: 75.15

GC content: 38.21

Gene sequence:

>1272_bases
ATGTTTATTGCAATTGCTGTTTTCTTAGTTAGTTACTTATTTATCATTACCGAAAAAATAAACCGAACTGCCATCGCCCT
TTTAGGCGGAACCGTGATTTTAATTACCGGCACCTTAACCCAGGAAGAAGCAATCCACTACATCGACTGGAATACTTTAG
GCCTTCTCTTAGGCATGATGATTATCGTCGATCTGACCAAGCACTCCGGATTATTCGAGTATTTAGCCCTAAAAGCGGTT
CATCTCACCCGGGCCAATCCTATAGCGCTTCTAATTGTTCTGGGTTTAATCACCGCTTTTTTATCGGCAATTTTAGATAA
TGTAACTACGGTTTTACTGATTGTGCCGGTAGCCTTAACCATAACCCGGGCCCTTAATATTTCTCCTTACCCGTTTTTAA
TTAACCAAATTTTAATGAGCAATATCGGCGGAACGGCAACGTTAATTGGGGACCCTCCCAATATTATGATCGGAAGCCAA
ACCCATCTTGGCTTTATTGATTTCTTAATTAACCTTAGCCCGGTTGTTTTGGTAATACTTATAGTAACTTCTACTATTTT
TTACTTTTTGTTTAGAAAAAGTTTTGCGGTGGACGATAAATTAAAACAAAATCTTTTAGCTTTAGATCCTAAAGACAAAA
TTACCGATTATCTTTTATTAAAAAAGAGTTTAATTATCATTGCCCTTACAATTTTAGGTTTTAGTCTTCATCAACTATTT
CACTTAGAATCGGCTACCGTCGCCCTTTTTATGGCCATGGTTTTTCTGGCAATTTCCGGTAAGGATATTGAACACGTCCT
TTTAGGGGTAGAATGGCCCACTATCTTTTTCTTTTTAGGGCTTTTTATCATGGTTGGAGCTTTAGAAGAAACCGGAGTTA
TCCATAAAATTGCTGTCTGGGGATTAGAATTAACCAAGGGAAATGTTTATTTAACCGGAGTGTTTATCCTCTGGGTTTCA
GCCATAGCTTCAGCGTTTATCGATAATATTCCTTTTGTCGCCACCATGATACCTTTAATCAAAACCATGGGTAATCTTGC
GGCTTTTTCCCCGGAAGTAATGGAAAGCTTCTGGTGGTCTTTAGCCTTAGGAGCCTGTCTTGGCGGTAACGGTACGATTA
TCGGTGCTTCGGCCAACGTTATTGTTGCCGGAATTGCCGAAAAAGAAGGTTATCCTATAAGTTATGGAAGGTATTTTGTT
TACGGTTTCCCTCTGATGCTATTATCAATAATAATCTCCATGGTTTATCTAACTTTGTTTTATTTTATGTAA

Upstream 100 bases:

>100_bases
AAAACCATTTAAGCCGCGCTTTTGCGCGGCTTTTGTATTAAATTTGATACTTTTCTTTAATAAATGGTAAGATAAAAAAT
AAAAAGCCCGGAGGTGTCTA

Downstream 100 bases:

>100_bases
GGGAGAGGTTTTATGAAAGAAAAATATACCGGTTGTCTTCTTGGCTTTTATTTGGGGGATGCCTTGGGAGTTACTTTAGA
AAATATGGAAGAAAAAGAAA

Product: arsenic transporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MFIAIAVFLVSYLFIITEKINRTAIALLGGTVILITGTLTQEEAIHYIDWNTLGLLLGMMIIVDLTKHSGLFEYLALKAV
HLTRANPIALLIVLGLITAFLSAILDNVTTVLLIVPVALTITRALNISPYPFLINQILMSNIGGTATLIGDPPNIMIGSQ
THLGFIDFLINLSPVVLVILIVTSTIFYFLFRKSFAVDDKLKQNLLALDPKDKITDYLLLKKSLIIIALTILGFSLHQLF
HLESATVALFMAMVFLAISGKDIEHVLLGVEWPTIFFFLGLFIMVGALEETGVIHKIAVWGLELTKGNVYLTGVFILWVS
AIASAFIDNIPFVATMIPLIKTMGNLAAFSPEVMESFWWSLALGACLGGNGTIIGASANVIVAGIAEKEGYPISYGRYFV
YGFPLMLLSIIISMVYLTLFYFM

Sequences:

>Translated_423_residues
MFIAIAVFLVSYLFIITEKINRTAIALLGGTVILITGTLTQEEAIHYIDWNTLGLLLGMMIIVDLTKHSGLFEYLALKAV
HLTRANPIALLIVLGLITAFLSAILDNVTTVLLIVPVALTITRALNISPYPFLINQILMSNIGGTATLIGDPPNIMIGSQ
THLGFIDFLINLSPVVLVILIVTSTIFYFLFRKSFAVDDKLKQNLLALDPKDKITDYLLLKKSLIIIALTILGFSLHQLF
HLESATVALFMAMVFLAISGKDIEHVLLGVEWPTIFFFLGLFIMVGALEETGVIHKIAVWGLELTKGNVYLTGVFILWVS
AIASAFIDNIPFVATMIPLIKTMGNLAAFSPEVMESFWWSLALGACLGGNGTIIGASANVIVAGIAEKEGYPISYGRYFV
YGFPLMLLSIIISMVYLTLFYFM
>Mature_423_residues
MFIAIAVFLVSYLFIITEKINRTAIALLGGTVILITGTLTQEEAIHYIDWNTLGLLLGMMIIVDLTKHSGLFEYLALKAV
HLTRANPIALLIVLGLITAFLSAILDNVTTVLLIVPVALTITRALNISPYPFLINQILMSNIGGTATLIGDPPNIMIGSQ
THLGFIDFLINLSPVVLVILIVTSTIFYFLFRKSFAVDDKLKQNLLALDPKDKITDYLLLKKSLIIIALTILGFSLHQLF
HLESATVALFMAMVFLAISGKDIEHVLLGVEWPTIFFFLGLFIMVGALEETGVIHKIAVWGLELTKGNVYLTGVFILWVS
AIASAFIDNIPFVATMIPLIKTMGNLAAFSPEVMESFWWSLALGACLGGNGTIIGASANVIVAGIAEKEGYPISYGRYFV
YGFPLMLLSIIISMVYLTLFYFM

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=502, Percent_Identity=34.6613545816733, Blast_Score=222, Evalue=7e-58,
Organism=Escherichia coli, GI1787039, Length=374, Percent_Identity=24.8663101604278, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87082277, Length=438, Percent_Identity=23.2876712328767, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19920704, Length=498, Percent_Identity=33.3333333333333, Blast_Score=224, Evalue=8e-59,
Organism=Drosophila melanogaster, GI28574683, Length=498, Percent_Identity=33.3333333333333, Blast_Score=224, Evalue=8e-59,
Organism=Drosophila melanogaster, GI28574681, Length=498, Percent_Identity=33.3333333333333, Blast_Score=224, Evalue=8e-59,
Organism=Drosophila melanogaster, GI28574685, Length=498, Percent_Identity=33.3333333333333, Blast_Score=224, Evalue=8e-59,
Organism=Drosophila melanogaster, GI28574678, Length=498, Percent_Identity=33.3333333333333, Blast_Score=224, Evalue=8e-59,
Organism=Drosophila melanogaster, GI24581759, Length=498, Percent_Identity=33.3333333333333, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI45550608, Length=473, Percent_Identity=34.6723044397463, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI85724998, Length=469, Percent_Identity=26.226012793177, Blast_Score=145, Evalue=5e-35,
Organism=Drosophila melanogaster, GI62484377, Length=469, Percent_Identity=26.226012793177, Blast_Score=145, Evalue=7e-35,
Organism=Drosophila melanogaster, GI24656008, Length=434, Percent_Identity=27.4193548387097, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI221472711, Length=171, Percent_Identity=39.1812865497076, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24581764, Length=168, Percent_Identity=39.8809523809524, Blast_Score=117, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 46363; Mature: 46363

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIAIAVFLVSYLFIITEKINRTAIALLGGTVILITGTLTQEEAIHYIDWNTLGLLLGMM
CHHHHHHHHHHHHHHHHHHHCHHHHHEECCEEEEEEECCCHHHCEEEECHHHHHHHHHHH
IIVDLTKHSGLFEYLALKAVHLTRANPIALLIVLGLITAFLSAILDNVTTVLLIVPVALT
HHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITRALNISPYPFLINQILMSNIGGTATLIGDPPNIMIGSQTHLGFIDFLINLSPVVLVIL
HHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
IVTSTIFYFLFRKSFAVDDKLKQNLLALDPKDKITDYLLLKKSLIIIALTILGFSLHQLF
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLESATVALFMAMVFLAISGKDIEHVLLGVEWPTIFFFLGLFIMVGALEETGVIHKIAVW
HHHHHHHHHHHHHHHHHHCCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHEE
GLELTKGNVYLTGVFILWVSAIASAFIDNIPFVATMIPLIKTMGNLAAFSPEVMESFWWS
EEEEECCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LALGACLGGNGTIIGASANVIVAGIAEKEGYPISYGRYFVYGFPLMLLSIIISMVYLTLF
HHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YFM
HHC
>Mature Secondary Structure
MFIAIAVFLVSYLFIITEKINRTAIALLGGTVILITGTLTQEEAIHYIDWNTLGLLLGMM
CHHHHHHHHHHHHHHHHHHHCHHHHHEECCEEEEEEECCCHHHCEEEECHHHHHHHHHHH
IIVDLTKHSGLFEYLALKAVHLTRANPIALLIVLGLITAFLSAILDNVTTVLLIVPVALT
HHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITRALNISPYPFLINQILMSNIGGTATLIGDPPNIMIGSQTHLGFIDFLINLSPVVLVIL
HHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
IVTSTIFYFLFRKSFAVDDKLKQNLLALDPKDKITDYLLLKKSLIIIALTILGFSLHQLF
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLESATVALFMAMVFLAISGKDIEHVLLGVEWPTIFFFLGLFIMVGALEETGVIHKIAVW
HHHHHHHHHHHHHHHHHHCCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHEE
GLELTKGNVYLTGVFILWVSAIASAFIDNIPFVATMIPLIKTMGNLAAFSPEVMESFWWS
EEEEECCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LALGACLGGNGTIIGASANVIVAGIAEKEGYPISYGRYFVYGFPLMLLSIIISMVYLTLF
HHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YFM
HHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]