| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is glyS [H]
Identifier: 78042751
GI number: 78042751
Start: 384037
End: 386109
Strand: Direct
Name: glyS [H]
Synonym: CHY_0440
Alternate gene names: 78042751
Gene position: 384037-386109 (Clockwise)
Preceding gene: 78045220
Following gene: 78043601
Centisome position: 15.99
GC content: 42.93
Gene sequence:
>2073_bases ATGGACTACTTACTGGAAATTGGTGTTGAAGAAATACCGGCGCGCTTTATTCCCGGGATTATTGAGGAGGTCAAAAATAA AGGGGAAGAATTCTTAAAGGAATTTGGGGTGCAGTATGAAGCGTTAATTTCCGAGGCAACACCCCGGAGGATTGTTTTTT ACGTTAAGGGAGTTTTACCGAAGACCGAAGAAAAAATTCAGGAAGTAAAGGGGCCCGCTAAGAAGGCTTCTTATGATAGC GAAGGAAATCCGACCAGGGCTCTTTTAGGTTTTGCCAGAAGCCAGGGGATAGAACCTAACGAAGTAATCGAAAAAGAGGT AAATGGGGTTATTTACGTTTTTGCCCGGAAAAAAACCGGGGGAAATCCGGTAGACGAATTGTTGCCTGAAATTGCCCGGA AGTTAATTAAAAACCTGTCTTTCCCCAAACCCATGCGCTGGGGAGATATAGATTTTAAGTTTATTCGCCCGATTCGCTGG CTTGTTTCCCTGCTGGATGAAAAAGTGATACCCCTTGAAATAGCCGGAATTAAGGCGGACAGGATATCCAGGGGTCACCG CTTCTTGGGGCAAAAGGAAGTTGTTTTAGATAGAGCAGCCGATTACTTTGTTGCAATGAGAGAGAATTATGTTATTGTTT CCCTGAATGAAAGAATTGAGATGATCAGGGCTCAGTTACATAGGGCAAGCGCCGAAGAAGGAGTTGTGGTAGATCAGGAT GAGGAACTTTTACTGGAAAACGCCAATTTGGTGGAGTATCCTACCGTGGTAATTGGAGAAATTAATAGAGAATTTTTAGA ACTACCTAAAGAAGTAATAATTACGCCAATGAAGGAACACCAGCGCTATTTTCCCCTGTTTAAAAATGATGGAAGTTTGT ACCACAAATTTTTAGCTGTTAGAAACGGAGGCAGGGAAAATTTAGCGGAAATTGCCGAGGGTTATGCCAAGGTTTTAAAG GCCAGGCTTTACGATGCCCGGTTTTTCTACCGGGAAGATTTGAAAAAACCGCTTGCCGCTTATAATGAAAAACTTACCCG GATAGTATTTCAGGAGAAGTTAGGAACGGTATGGGATAAAGTTTTACGCTTAAAGGAACTTGTGGTGGCTATTGGCAGGG AACTTAATTGTGATGATGAGGTAAAAAGTTACGCCGTCCGGGCAGCGGAGCTTTCTAAAGCAGATCTTGCTACCAATATG GTTTATGAGTTTCCCGAGCTCCAGGGGATTATGGGTCGGGATTATGCTTTAAAGTCCGGGGAAAGAAAGGAAGTAGCCGA GGCTATTTTTGAGCATTACCTTCCAAGATTTTCAGGGGATATTGTGGCAACCTCTGAAGTCGGAATTTTACTGTCCTGTG CCGAAAAAATAGATAACCTTACGGCATTTTTTGCCTTAAAACAAATTCCAACCGGTTCGGCGGACCCCTTTGGCTTACGG CGGCAAGCTTTAGGACTTCTTCGCACGTTAATTGAAAACAAACGCTTCTTTTCTTTAAAGAAGGCTTTTGATGCTGCTTT TAATTTGTTACCCGCCGAGGTTCGGGAAAAAGCGAATTTCGCCGAAGTTTATGAAGAACTCTTGGAGTTTATTTACCAAA GATTTAAGGGTTTTTTACTGGAAGAGGGATTTTCTTACGATACCATTGATGCGGTGCTGGCTACCGGAAAAGATGACTTT TATGACCTTTACTTAAGAGTTCGGGCTTTAGAAAATCTCAGAAACCATCCGAGTTTCACAGCTCTTACTACGACCTTTAC GCGGGCGTACAACCTGGCCCGTAAAGGACAGGGAAGGGAAGTAGCTGAAAGTTTATTATATGAGCCGGCGGAAAAAGAGC TTTTTGCTGAGTTTCGCGAGATTTCCCTAAATGTTAAGGAGCTTTTAAGGGAAAAAGCTTACTTAAAAGCCATGGAAGAA GTGGCGGCATTAGCAAACCCTTTAGACCGGTTCTTTAACGAAGTGCTGGTGATGGCTGAAGACGAAAAGATAAGGGAAAA TCGCCTTGGATTACTTGGAGCAATTGCCGGACTTGTTCTAGAAATTGCCGATTTGAGCAAAATTGTTGGTTAA
Upstream 100 bases:
>100_bases GAATCAGAAACTTGGCTCGCCTGGTTGCGCAGAAGTACATTGAGCAGCGGGAGAGTCTCGGTTTTCCGCTTTTAAAAAAA TAATTTAGGGGGGAGAAAAA
Downstream 100 bases:
>100_bases TTTTTTGCAAAAAATTATTAAATTAGGAGGTATTTTTTAAGTAAATATAGTATAATATATCCTGTAAGCTAATTAAATAA TATAGCACATTTCCTTAAGG
Product: glycyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 690; Mature: 690
Protein sequence:
>690_residues MDYLLEIGVEEIPARFIPGIIEEVKNKGEEFLKEFGVQYEALISEATPRRIVFYVKGVLPKTEEKIQEVKGPAKKASYDS EGNPTRALLGFARSQGIEPNEVIEKEVNGVIYVFARKKTGGNPVDELLPEIARKLIKNLSFPKPMRWGDIDFKFIRPIRW LVSLLDEKVIPLEIAGIKADRISRGHRFLGQKEVVLDRAADYFVAMRENYVIVSLNERIEMIRAQLHRASAEEGVVVDQD EELLLENANLVEYPTVVIGEINREFLELPKEVIITPMKEHQRYFPLFKNDGSLYHKFLAVRNGGRENLAEIAEGYAKVLK ARLYDARFFYREDLKKPLAAYNEKLTRIVFQEKLGTVWDKVLRLKELVVAIGRELNCDDEVKSYAVRAAELSKADLATNM VYEFPELQGIMGRDYALKSGERKEVAEAIFEHYLPRFSGDIVATSEVGILLSCAEKIDNLTAFFALKQIPTGSADPFGLR RQALGLLRTLIENKRFFSLKKAFDAAFNLLPAEVREKANFAEVYEELLEFIYQRFKGFLLEEGFSYDTIDAVLATGKDDF YDLYLRVRALENLRNHPSFTALTTTFTRAYNLARKGQGREVAESLLYEPAEKELFAEFREISLNVKELLREKAYLKAMEE VAALANPLDRFFNEVLVMAEDEKIRENRLGLLGAIAGLVLEIADLSKIVG
Sequences:
>Translated_690_residues MDYLLEIGVEEIPARFIPGIIEEVKNKGEEFLKEFGVQYEALISEATPRRIVFYVKGVLPKTEEKIQEVKGPAKKASYDS EGNPTRALLGFARSQGIEPNEVIEKEVNGVIYVFARKKTGGNPVDELLPEIARKLIKNLSFPKPMRWGDIDFKFIRPIRW LVSLLDEKVIPLEIAGIKADRISRGHRFLGQKEVVLDRAADYFVAMRENYVIVSLNERIEMIRAQLHRASAEEGVVVDQD EELLLENANLVEYPTVVIGEINREFLELPKEVIITPMKEHQRYFPLFKNDGSLYHKFLAVRNGGRENLAEIAEGYAKVLK ARLYDARFFYREDLKKPLAAYNEKLTRIVFQEKLGTVWDKVLRLKELVVAIGRELNCDDEVKSYAVRAAELSKADLATNM VYEFPELQGIMGRDYALKSGERKEVAEAIFEHYLPRFSGDIVATSEVGILLSCAEKIDNLTAFFALKQIPTGSADPFGLR RQALGLLRTLIENKRFFSLKKAFDAAFNLLPAEVREKANFAEVYEELLEFIYQRFKGFLLEEGFSYDTIDAVLATGKDDF YDLYLRVRALENLRNHPSFTALTTTFTRAYNLARKGQGREVAESLLYEPAEKELFAEFREISLNVKELLREKAYLKAMEE VAALANPLDRFFNEVLVMAEDEKIRENRLGLLGAIAGLVLEIADLSKIVG >Mature_690_residues MDYLLEIGVEEIPARFIPGIIEEVKNKGEEFLKEFGVQYEALISEATPRRIVFYVKGVLPKTEEKIQEVKGPAKKASYDS EGNPTRALLGFARSQGIEPNEVIEKEVNGVIYVFARKKTGGNPVDELLPEIARKLIKNLSFPKPMRWGDIDFKFIRPIRW LVSLLDEKVIPLEIAGIKADRISRGHRFLGQKEVVLDRAADYFVAMRENYVIVSLNERIEMIRAQLHRASAEEGVVVDQD EELLLENANLVEYPTVVIGEINREFLELPKEVIITPMKEHQRYFPLFKNDGSLYHKFLAVRNGGRENLAEIAEGYAKVLK ARLYDARFFYREDLKKPLAAYNEKLTRIVFQEKLGTVWDKVLRLKELVVAIGRELNCDDEVKSYAVRAAELSKADLATNM VYEFPELQGIMGRDYALKSGERKEVAEAIFEHYLPRFSGDIVATSEVGILLSCAEKIDNLTAFFALKQIPTGSADPFGLR RQALGLLRTLIENKRFFSLKKAFDAAFNLLPAEVREKANFAEVYEELLEFIYQRFKGFLLEEGFSYDTIDAVLATGKDDF YDLYLRVRALENLRNHPSFTALTTTFTRAYNLARKGQGREVAESLLYEPAEKELFAEFREISLNVKELLREKAYLKAMEE VAALANPLDRFFNEVLVMAEDEKIRENRLGLLGAIAGLVLEIADLSKIVG
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=688, Percent_Identity=35.1744186046512, Blast_Score=399, Evalue=1e-112,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 78703; Mature: 78703
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYLLEIGVEEIPARFIPGIIEEVKNKGEEFLKEFGVQYEALISEATPRRIVFYVKGVLP CCCHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCC KTEEKIQEVKGPAKKASYDSEGNPTRALLGFARSQGIEPNEVIEKEVNGVIYVFARKKTG CHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCC GNPVDELLPEIARKLIKNLSFPKPMRWGDIDFKFIRPIRWLVSLLDEKVIPLEIAGIKAD CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHH RISRGHRFLGQKEVVLDRAADYFVAMRENYVIVSLNERIEMIRAQLHRASAEEGVVVDQD HHHHHHHHCCCHHHHHHHHHHHHHEEECCEEEEEHHHHHHHHHHHHHHCCCCCCEEECCC EELLLENANLVEYPTVVIGEINREFLELPKEVIITPMKEHQRYFPLFKNDGSLYHKFLAV HHHHHHCCCCEECCHHHHHHCCHHHHHCCHHHCCCCHHHHHHHCCEECCCCHHHHHHHHH RNGGRENLAEIAEGYAKVLKARLYDARFFYREDLKKPLAAYNEKLTRIVFQEKLGTVWDK HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLRLKELVVAIGRELNCDDEVKSYAVRAAELSKADLATNMVYEFPELQGIMGRDYALKSG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHCCCC ERKEVAEAIFEHYLPRFSGDIVATSEVGILLSCAEKIDNLTAFFALKQIPTGSADPFGLR CHHHHHHHHHHHHCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH RQALGLLRTLIENKRFFSLKKAFDAAFNLLPAEVREKANFAEVYEELLEFIYQRFKGFLL HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHH EEGFSYDTIDAVLATGKDDFYDLYLRVRALENLRNHPSFTALTTTFTRAYNLARKGQGRE HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHH VAESLLYEPAEKELFAEFREISLNVKELLREKAYLKAMEEVAALANPLDRFFNEVLVMAE HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DEKIRENRLGLLGAIAGLVLEIADLSKIVG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDYLLEIGVEEIPARFIPGIIEEVKNKGEEFLKEFGVQYEALISEATPRRIVFYVKGVLP CCCHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCC KTEEKIQEVKGPAKKASYDSEGNPTRALLGFARSQGIEPNEVIEKEVNGVIYVFARKKTG CHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCC GNPVDELLPEIARKLIKNLSFPKPMRWGDIDFKFIRPIRWLVSLLDEKVIPLEIAGIKAD CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHH RISRGHRFLGQKEVVLDRAADYFVAMRENYVIVSLNERIEMIRAQLHRASAEEGVVVDQD HHHHHHHHCCCHHHHHHHHHHHHHEEECCEEEEEHHHHHHHHHHHHHHCCCCCCEEECCC EELLLENANLVEYPTVVIGEINREFLELPKEVIITPMKEHQRYFPLFKNDGSLYHKFLAV HHHHHHCCCCEECCHHHHHHCCHHHHHCCHHHCCCCHHHHHHHCCEECCCCHHHHHHHHH RNGGRENLAEIAEGYAKVLKARLYDARFFYREDLKKPLAAYNEKLTRIVFQEKLGTVWDK HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLRLKELVVAIGRELNCDDEVKSYAVRAAELSKADLATNMVYEFPELQGIMGRDYALKSG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHCCCC ERKEVAEAIFEHYLPRFSGDIVATSEVGILLSCAEKIDNLTAFFALKQIPTGSADPFGLR CHHHHHHHHHHHHCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH RQALGLLRTLIENKRFFSLKKAFDAAFNLLPAEVREKANFAEVYEELLEFIYQRFKGFLL HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHH EEGFSYDTIDAVLATGKDDFYDLYLRVRALENLRNHPSFTALTTTFTRAYNLARKGQGRE HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHH VAESLLYEPAEKELFAEFREISLNVKELLREKAYLKAMEEVAALANPLDRFFNEVLVMAE HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DEKIRENRLGLLGAIAGLVLEIADLSKIVG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA