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The map label for this gene is ccmK1 [H]

Identifier: 78042706

GI number: 78042706

Start: 598972

End: 599325

Strand: Direct

Name: ccmK1 [H]

Synonym: CHY_0684

Alternate gene names: 78042706

Gene position: 598972-599325 (Clockwise)

Preceding gene: 78044901

Following gene: 78043317

Centisome position: 24.94

GC content: 41.81

Gene sequence:

>354_bases
ATGAATAAAGCCCTTGGTCTAATTGAAGCAATTGGTTACTCTACCGCTATGACGGCTTTAGATGCTGCTGTAAAAGCTGC
CAACGTTACCTTTTTGGGCTTTGAACGGGTTATAGGGGCTGGAAAAAAAATTTCCGTTACCATAAAGCTTGAAGGGGAGG
TTGCGGCGGTAAAAGCTGCGGTTGATGCAGGTGTTGCGGCGGCTCAAAGAGTGGGCGAAGTTTTAACTTCGCATGTAATT
CCTCGACCCCATCAGGAGTTAGATAAAATCATTTTTAGCAGTGAAACCCAAGAATCGTTGTTAAAGCCTAAAAATCCTGC
GGAAAAAAATAAGGATAATAAAAAATCTAAGTAA

Upstream 100 bases:

>100_bases
TAACCGGCGATTCAGCAGCGGTTAAAAATGCCTTAGAAGCAGCTCGGGAAGTTGGATTGCAGGTTTTGGCGGAATTTAGG
GCTTAAAGGAGGTTTATTCG

Downstream 100 bases:

>100_bases
AAATTTTAAGGAGGTAATTTAATCATGGGTGAAGCTTTAGGTTTAATTGAAACTAAAGGTTTAGTGGCGGCGATTGAAGC
GGCGGACGCGATGGTCAAGG

Product: microcompartments family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MNKALGLIEAIGYSTAMTALDAAVKAANVTFLGFERVIGAGKKISVTIKLEGEVAAVKAAVDAGVAAAQRVGEVLTSHVI
PRPHQELDKIIFSSETQESLLKPKNPAEKNKDNKKSK

Sequences:

>Translated_117_residues
MNKALGLIEAIGYSTAMTALDAAVKAANVTFLGFERVIGAGKKISVTIKLEGEVAAVKAAVDAGVAAAQRVGEVLTSHVI
PRPHQELDKIIFSSETQESLLKPKNPAEKNKDNKKSK
>Mature_117_residues
MNKALGLIEAIGYSTAMTALDAAVKAANVTFLGFERVIGAGKKISVTIKLEGEVAAVKAAVDAGVAAAQRVGEVLTSHVI
PRPHQELDKIIFSSETQESLLKPKNPAEKNKDNKKSK

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=88, Percent_Identity=50, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 12354; Mature: 12354

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKALGLIEAIGYSTAMTALDAAVKAANVTFLGFERVIGAGKKISVTIKLEGEVAAVKAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCCCCEEEEEEEECCCHHHHHHH
VDAGVAAAQRVGEVLTSHVIPRPHQELDKIIFSSETQESLLKPKNPAEKNKDNKKSK
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNKALGLIEAIGYSTAMTALDAAVKAANVTFLGFERVIGAGKKISVTIKLEGEVAAVKAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCCCCEEEEEEEECCCHHHHHHH
VDAGVAAAQRVGEVLTSHVIPRPHQELDKIIFSSETQESLLKPKNPAEKNKDNKKSK
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]