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The map label for this gene is yfdE [H]

Identifier: 77465194

GI number: 77465194

Start: 232784

End: 233965

Strand: Reverse

Name: yfdE [H]

Synonym: RSP_3181

Alternate gene names: 77465194

Gene position: 233965-232784 (Counterclockwise)

Preceding gene: 77465195

Following gene: 77465191

Centisome position: 24.81

GC content: 75.97

Gene sequence:

>1182_bases
GTGAGCCTCGCCGAGGGCGGGCCGGAGGCTTCCGGAGAAGCCCCTGCCGGACCGCTGGCGGGGCTGCGGATCGTCGAGAT
GGTGGGCCTCGGCCCCTGCCCCTTCGCGGCGATGATGCTCTCGGATGCGGGCGCCGAGGTGATCCGCGTCCATCCGCTCG
CGGCGCGCGCCGAGATCCCGCTGATGGACACGGAGTTCGACGTGCTGGCGCGCGGGCGGCGCTCCATCGCGATCGACCTC
AAGCGGCCCGAGGGGGTGGCGCTGCTCCTCGATCTCGCGGAGCGGGCGGACGGGCTGATGGAGGGCTTCCGGCCGGGCGT
GATGGAGCGGCTGGGGCTCGGGCCCGCGGAGTGTCATGCGCGCAATCCGCGCCTCGTCTACGGGCGGATGACGGGCTGGG
GGCAGGACGGGCCGCTGGCCGCCACCGCCGGGCACGATCTGACCTATATCGCGCTCTCGGGCGTCCTCGGCGCGCTGGGG
CCTGCCGACCGGCCGCCGGCGGTGCCGCTGAATCTCATCGGCGATTTCGGCGGCGGCGGCATGATGCTGGCCTTCGGGAT
GGTGGCGGCCCTCCTGCAGGCGCGCACGACCGGGCGCGGGCAGGTGGTCGACGCGGCCATGACCGAGGGCGCCTCGCTGC
TCGCCGCGATGATCTGGGGCTTCCGGGCCGGCGGCGCCTGGCAGGACGGGCGGCAGGCGAACCTCCTCGACGGCGGGGCC
TGGTTCTACGGCACCTACGAATGCGCCGACGGCCGCTTCCTCGCCGTGGCCCCGATCGAGGGCCGGTTCGCGCGGACCTT
CCTCGAGCGGCTGGGCCCCGAAGCTGCGGAGCTGCGGCAGGGACCGCCCGCCGACTGGCCCGCGCAGCGCACGCGGCTGG
CCGGGATCCTGCGGACGAAGCCGCGGGACGAATGGGTCGCTCTCTTCGCTGGAACCGACGCCTGCGTGGCGCCGGTGCTG
GACTGGTCAGAGGCGCCGGAGCATCCGCAGGCCCGTGCCCGCGAGACCTTCGTGACCGTGGGCGGCGTGCCCCAGCCCGC
CCCTGCCCCGCGCTTCTCCGACTTCCCGGGCCCGCGGCCCTCTCCGCCCGCGCGGCCCGGGGCCGACACGGCCGAGATCC
TCGCCCGCTGGGGTGTGGACGGAGGCCCGGCCGCCGCCGCAGGCGCCATCCCGACGGGCTGA

Upstream 100 bases:

>100_bases
GCGACTTTCCCGTGGAGCGGATCTACCGCGATGTCCGGGTGTGCCAGATCTACGAGGGCACCTCGGACATCCAGAAGATG
CTGATCCTCAGGGGCATGGC

Downstream 100 bases:

>100_bases
GGCTCAGCCCGTCTCCGCCACTTCCTCGCAGCGCACGAAGAAGTTCGTGAGCAGATGCGGCCCGAAGGAATGGACCATCG
GCACGTCCGCCGCATCCCGG

Product: fatty-acyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MSLAEGGPEASGEAPAGPLAGLRIVEMVGLGPCPFAAMMLSDAGAEVIRVHPLAARAEIPLMDTEFDVLARGRRSIAIDL
KRPEGVALLLDLAERADGLMEGFRPGVMERLGLGPAECHARNPRLVYGRMTGWGQDGPLAATAGHDLTYIALSGVLGALG
PADRPPAVPLNLIGDFGGGGMMLAFGMVAALLQARTTGRGQVVDAAMTEGASLLAAMIWGFRAGGAWQDGRQANLLDGGA
WFYGTYECADGRFLAVAPIEGRFARTFLERLGPEAAELRQGPPADWPAQRTRLAGILRTKPRDEWVALFAGTDACVAPVL
DWSEAPEHPQARARETFVTVGGVPQPAPAPRFSDFPGPRPSPPARPGADTAEILARWGVDGGPAAAAGAIPTG

Sequences:

>Translated_393_residues
MSLAEGGPEASGEAPAGPLAGLRIVEMVGLGPCPFAAMMLSDAGAEVIRVHPLAARAEIPLMDTEFDVLARGRRSIAIDL
KRPEGVALLLDLAERADGLMEGFRPGVMERLGLGPAECHARNPRLVYGRMTGWGQDGPLAATAGHDLTYIALSGVLGALG
PADRPPAVPLNLIGDFGGGGMMLAFGMVAALLQARTTGRGQVVDAAMTEGASLLAAMIWGFRAGGAWQDGRQANLLDGGA
WFYGTYECADGRFLAVAPIEGRFARTFLERLGPEAAELRQGPPADWPAQRTRLAGILRTKPRDEWVALFAGTDACVAPVL
DWSEAPEHPQARARETFVTVGGVPQPAPAPRFSDFPGPRPSPPARPGADTAEILARWGVDGGPAAAAGAIPTG
>Mature_392_residues
SLAEGGPEASGEAPAGPLAGLRIVEMVGLGPCPFAAMMLSDAGAEVIRVHPLAARAEIPLMDTEFDVLARGRRSIAIDLK
RPEGVALLLDLAERADGLMEGFRPGVMERLGLGPAECHARNPRLVYGRMTGWGQDGPLAATAGHDLTYIALSGVLGALGP
ADRPPAVPLNLIGDFGGGGMMLAFGMVAALLQARTTGRGQVVDAAMTEGASLLAAMIWGFRAGGAWQDGRQANLLDGGAW
FYGTYECADGRFLAVAPIEGRFARTFLERLGPEAAELRQGPPADWPAQRTRLAGILRTKPRDEWVALFAGTDACVAPVLD
WSEAPEHPQARARETFVTVGGVPQPAPAPRFSDFPGPRPSPPARPGADTAEILARWGVDGGPAAAAGAIPTG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=364, Percent_Identity=43.1318681318681, Blast_Score=292, Evalue=4e-79,
Organism=Homo sapiens, GI266456254, Length=364, Percent_Identity=43.1318681318681, Blast_Score=292, Evalue=4e-79,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=46.4566929133858, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=46.2151394422311, Blast_Score=228, Evalue=6e-60,
Organism=Homo sapiens, GI300863128, Length=377, Percent_Identity=27.5862068965517, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=47.7941176470588, Blast_Score=128, Evalue=9e-30,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=47.7941176470588, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI300863124, Length=403, Percent_Identity=26.302729528536, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI300863126, Length=375, Percent_Identity=25.3333333333333, Blast_Score=105, Evalue=1e-22,
Organism=Escherichia coli, GI87082093, Length=368, Percent_Identity=27.445652173913, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786222, Length=384, Percent_Identity=28.6458333333333, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788717, Length=207, Percent_Identity=30.9178743961353, Blast_Score=86, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=344, Percent_Identity=34.0116279069767, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI32564160, Length=335, Percent_Identity=31.6417910447761, Blast_Score=188, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24585488, Length=345, Percent_Identity=41.4492753623188, Blast_Score=269, Evalue=2e-72,
Organism=Drosophila melanogaster, GI24648431, Length=335, Percent_Identity=30.7462686567164, Blast_Score=115, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40913; Mature: 40782

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAEGGPEASGEAPAGPLAGLRIVEMVGLGPCPFAAMMLSDAGAEVIRVHPLAARAEIP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCHHCCCCC
LMDTEFDVLARGRRSIAIDLKRPEGVALLLDLAERADGLMEGFRPGVMERLGLGPAECHA
CCCCCHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHCCHHHHHHHCCCHHHHCC
RNPRLVYGRMTGWGQDGPLAATAGHDLTYIALSGVLGALGPADRPPAVPLNLIGDFGGGG
CCCEEEEEECCCCCCCCCEEEECCCCEEHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCH
MMLAFGMVAALLQARTTGRGQVVDAAMTEGASLLAAMIWGFRAGGAWQDGRQANLLDGGA
HHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCE
WFYGTYECADGRFLAVAPIEGRFARTFLERLGPEAAELRQGPPADWPAQRTRLAGILRTK
EEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHCC
PRDEWVALFAGTDACVAPVLDWSEAPEHPQARARETFVTVGGVPQPAPAPRFSDFPGPRP
CCCCEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCC
SPPARPGADTAEILARWGVDGGPAAAAGAIPTG
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLAEGGPEASGEAPAGPLAGLRIVEMVGLGPCPFAAMMLSDAGAEVIRVHPLAARAEIP
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCHHCCCCC
LMDTEFDVLARGRRSIAIDLKRPEGVALLLDLAERADGLMEGFRPGVMERLGLGPAECHA
CCCCCHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHCCHHHHHHHCCCHHHHCC
RNPRLVYGRMTGWGQDGPLAATAGHDLTYIALSGVLGALGPADRPPAVPLNLIGDFGGGG
CCCEEEEEECCCCCCCCCEEEECCCCEEHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCH
MMLAFGMVAALLQARTTGRGQVVDAAMTEGASLLAAMIWGFRAGGAWQDGRQANLLDGGA
HHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCE
WFYGTYECADGRFLAVAPIEGRFARTFLERLGPEAAELRQGPPADWPAQRTRLAGILRTK
EEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHCC
PRDEWVALFAGTDACVAPVLDWSEAPEHPQARARETFVTVGGVPQPAPAPRFSDFPGPRP
CCCCEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCC
SPPARPGADTAEILARWGVDGGPAAAAGAIPTG
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]