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The map label for this gene is yhjC [C]

Identifier: 77465137

GI number: 77465137

Start: 169000

End: 169896

Strand: Direct

Name: yhjC [C]

Synonym: RSP_3124

Alternate gene names: 77465137

Gene position: 169000-169896 (Clockwise)

Preceding gene: 77465130

Following gene: 77465138

Centisome position: 17.92

GC content: 70.57

Gene sequence:

>897_bases
ATGGATCTGACCGATGAACTCCGGGCCTTCGTGGCCACGGCCAAGACCGGCTCCTTCACGGCGGCGGCGGACCAACTCGG
GGTGTCGAACCGGCTGACCTCAAAATATGTGGCCGAGCTGGAGAAGCGGCTCGGCGTCAGGCTGCTCCAGCGCACCACCC
GCAAGGTCGGGCTCACTCCCTCAGGCGAGACCCTGCTGGCCCGGGCTCCGGCGCTGCTGGACGAACTCGACGACCTGCTG
GTCGAGGTCTCGCACGGCTCGCGCGGCTTCACCGGCACGATCCGCGTCTCGGCCCCCGTGACGTTCGGCGAGGACTATGT
CGGAGGGATGCTCGGCCGCTTCGCCGCGCTGCACCCGGGGCTGGTGGTCGACCTGAGGCTGAACGACAGCTTCGCCGACC
TCGCGAGCGAGGGGATCGATGTGGCCTTCCGGGTCGGGCGATCCGAGACGCTGTCGCTGAAGACCCGGAAGCTGGGCGAG
GTGCGCACCGTTCCGGCCGCCAGCCCCGGCTATATCGCGACCCGTGGCGCCCCCGACCGGCCCGAGGACCTCGTCCGGCA
TGACTGCATCCTCGACACCAACCGCCGGGTGCCGCGCCGCTGGACGTTCCTCGAGGACGGGACCGAGCGCAGCGTCGAGA
TCCGGGGGCGGTTTCAGGTCAATTCCGCCCGTGCCGCGGCCGATCTCGCAATGGCGGGGCTGGGCATCTGCTATGCCCCG
CGGTTCGCTCTGGCCGAGGCGCTTCGGTCCGGCCGGCTCGTCCCGGTGCTCGAGGCGTTCGGCGGCGCGGTCGTGCCGGT
CAGCGCGGTCTATCTCGAAGGCCGCAGCCTGCCGCAGAAGGTCCGAGCGCTGATCGACTTCGCGCTCGAGGACATCCGGC
AGTCCGGCGTGCTGTGA

Upstream 100 bases:

>100_bases
TGCGGCGCTTCGGTTCGTTGCAGCCAAGATAGGCCTTGCTGCAGTTCAACAATATGGAGATGTTGTTGTATGACTATCCA
CTAAGCGTTCTGAATAATCC

Downstream 100 bases:

>100_bases
GGACTGGCGAGCTTCGGCTTGCACAGGCGCAACAGTTCGACTATGCATGAATAATGGAAAAGACTCACGCTCTGGGTGTC
CTGTCTGCCCTTGCCCACGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDLTDELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTPSGETLLARAPALLDELDDLL
VEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALHPGLVVDLRLNDSFADLASEGIDVAFRVGRSETLSLKTRKLGE
VRTVPAASPGYIATRGAPDRPEDLVRHDCILDTNRRVPRRWTFLEDGTERSVEIRGRFQVNSARAAADLAMAGLGICYAP
RFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDFALEDIRQSGVL

Sequences:

>Translated_298_residues
MDLTDELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTPSGETLLARAPALLDELDDLL
VEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALHPGLVVDLRLNDSFADLASEGIDVAFRVGRSETLSLKTRKLGE
VRTVPAASPGYIATRGAPDRPEDLVRHDCILDTNRRVPRRWTFLEDGTERSVEIRGRFQVNSARAAADLAMAGLGICYAP
RFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDFALEDIRQSGVL
>Mature_298_residues
MDLTDELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTPSGETLLARAPALLDELDDLL
VEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALHPGLVVDLRLNDSFADLASEGIDVAFRVGRSETLSLKTRKLGE
VRTVPAASPGYIATRGAPDRPEDLVRHDCILDTNRRVPRRWTFLEDGTERSVEIRGRFQVNSARAAADLAMAGLGICYAP
RFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDFALEDIRQSGVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=32.0689655172414, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=30.4195804195804, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=30.5084745762712, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=30.5555555555556, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.4117647058824, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=27.972027972028, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787589, Length=261, Percent_Identity=29.1187739463602, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790011, Length=299, Percent_Identity=24.4147157190635, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789173, Length=268, Percent_Identity=27.2388059701493, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788706, Length=305, Percent_Identity=23.6065573770492, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786448, Length=180, Percent_Identity=31.6666666666667, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789506, Length=122, Percent_Identity=28.6885245901639, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082132, Length=275, Percent_Identity=26.1818181818182, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI157672245, Length=127, Percent_Identity=32.2834645669291, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32174; Mature: 32174

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTDELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTP
CCHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGETLLARAPALLDELDDLLVEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALHPG
CCCHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCC
LVVDLRLNDSFADLASEGIDVAFRVGRSETLSLKTRKLGEVRTVPAASPGYIATRGAPDR
EEEEEEECCCHHHHHHCCCCEEEEECCCCEEEEHHHHCCCEEECCCCCCCEEEECCCCCC
PEDLVRHDCILDTNRRVPRRWTFLEDGTERSVEIRGRFQVNSARAAADLAMAGLGICYAP
HHHHHHHHHEECCCCCCCCEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHH
RFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDFALEDIRQSGVL
HHHHHHHHHCCCCEEHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLTDELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTP
CCHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGETLLARAPALLDELDDLLVEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALHPG
CCCHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCC
LVVDLRLNDSFADLASEGIDVAFRVGRSETLSLKTRKLGEVRTVPAASPGYIATRGAPDR
EEEEEEECCCHHHHHHCCCCEEEEECCCCEEEEHHHHCCCEEECCCCCCCEEEECCCCCC
PEDLVRHDCILDTNRRVPRRWTFLEDGTERSVEIRGRFQVNSARAAADLAMAGLGICYAP
HHHHHHHHHEECCCCCCCCEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHH
RFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDFALEDIRQSGVL
HHHHHHHHHCCCCEEHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]