Click here to switch to the map view.

The map label for this gene is yrpE [H]

Identifier: 77465130

GI number: 77465130

Start: 162726

End: 163409

Strand: Direct

Name: yrpE [H]

Synonym: RSP_3117

Alternate gene names: 77465130

Gene position: 162726-163409 (Clockwise)

Preceding gene: 77465125

Following gene: 77465137

Centisome position: 17.26

GC content: 66.96

Gene sequence:

>684_bases
ATGCAGACCGTCCTTTCACGCCCCCTGAGCATCCTCGCCGCCAGTGTGGCGCTCGCAGTGGCCGCCCCCGCGCTTGCCGA
GAAGCCGCACGACCACGGGCACGATCATGCGCACGGCCATGGCCATGACGAGGCCCACAGCCACGCTTCGGACGAGATCG
CCAAGGGCGTCTTCAAGGATGAGCAGGTCGCCGACCGCCCGCTCTCGGACTGGCAGGGCGACTGGCAGTCGGTCTATCCG
CTGCTGGAGGACGGCACGCTGGCGCCGGTGATGGCGCACAAGGCCGAGCATGGCGACAAGACGGCCGAGGAATATCTCGC
CTACTACCGGACGGGCTACGAGACCGACGTGAACCGCATCGAGATCGACGGCGACCGGGTGACCTTCCACGGCGCGGGCG
GGCCGGTCTCGGGGCAGTATGAGGAGGACGGTCACGAAGTGCTGACCTACAAGGCCGGCAATCGGGGCGTCCGCTTCATC
TTCGAGAAGGTGAGCGGAGACGAGGCCGCGCCGAAGTTCATCCAGTTCAGCGACCACCGGATCGCGCCGTCGACGTCGGA
CCATTACCACCTCTACTGGGGCAACGACCGCGCGGCGCTCCTTCAGGAGGTGACGCACTGGCCGACCTATTACCCCGCCG
AGCTGAGCGCCGAGGAGATCGTTCAGGAGATGCTCGCGCACTGA

Upstream 100 bases:

>100_bases
CGGTTGCCAAGGGGCTCGCGAGATCCTAAAGCGGAGCAGATATGTAATAACATATCATATACGCATCATCCGAACACCCC
GGAACATGGAGACCTCCCGC

Downstream 100 bases:

>100_bases
TCCCGAGGGGCAGGTCCGGCGCCTGCCCCTCGGGGTCCTGCCTCGGGGGCAACCGTCCCGAGGCAGGATCCCTCAGGGCC
GCGCTTGCCGGCCGAGCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MQTVLSRPLSILAASVALAVAAPALAEKPHDHGHDHAHGHGHDEAHSHASDEIAKGVFKDEQVADRPLSDWQGDWQSVYP
LLEDGTLAPVMAHKAEHGDKTAEEYLAYYRTGYETDVNRIEIDGDRVTFHGAGGPVSGQYEEDGHEVLTYKAGNRGVRFI
FEKVSGDEAAPKFIQFSDHRIAPSTSDHYHLYWGNDRAALLQEVTHWPTYYPAELSAEEIVQEMLAH

Sequences:

>Translated_227_residues
MQTVLSRPLSILAASVALAVAAPALAEKPHDHGHDHAHGHGHDEAHSHASDEIAKGVFKDEQVADRPLSDWQGDWQSVYP
LLEDGTLAPVMAHKAEHGDKTAEEYLAYYRTGYETDVNRIEIDGDRVTFHGAGGPVSGQYEEDGHEVLTYKAGNRGVRFI
FEKVSGDEAAPKFIQFSDHRIAPSTSDHYHLYWGNDRAALLQEVTHWPTYYPAELSAEEIVQEMLAH
>Mature_227_residues
MQTVLSRPLSILAASVALAVAAPALAEKPHDHGHDHAHGHGHDEAHSHASDEIAKGVFKDEQVADRPLSDWQGDWQSVYP
LLEDGTLAPVMAHKAEHGDKTAEEYLAYYRTGYETDVNRIEIDGDRVTFHGAGGPVSGQYEEDGHEVLTYKAGNRGVRFI
FEKVSGDEAAPKFIQFSDHRIAPSTSDHYHLYWGNDRAALLQEVTHWPTYYPAELSAEEIVQEMLAH

Specific function: May Be Involved In Stress Response. [C]

COG id: COG3443

COG function: function code R; Predicted periplasmic or secreted protein

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. YodA family [H]

Homologues:

Organism=Escherichia coli, GI1788284, Length=223, Percent_Identity=46.1883408071749, Blast_Score=192, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR015304 [H]

Pfam domain/function: PF09223 YodA [H]

EC number: NA

Molecular weight: Translated: 25187; Mature: 25187

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTVLSRPLSILAASVALAVAAPALAEKPHDHGHDHAHGHGHDEAHSHASDEIAKGVFKD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
EQVADRPLSDWQGDWQSVYPLLEDGTLAPVMAHKAEHGDKTAEEYLAYYRTGYETDVNRI
HHHHCCCCHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEE
EIDGDRVTFHGAGGPVSGQYEEDGHEVLTYKAGNRGVRFIFEKVSGDEAAPKFIQFSDHR
EECCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEHEEHHCCCCCCCHHEEECCCC
IAPSTSDHYHLYWGNDRAALLQEVTHWPTYYPAELSAEEIVQEMLAH
CCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MQTVLSRPLSILAASVALAVAAPALAEKPHDHGHDHAHGHGHDEAHSHASDEIAKGVFKD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
EQVADRPLSDWQGDWQSVYPLLEDGTLAPVMAHKAEHGDKTAEEYLAYYRTGYETDVNRI
HHHHCCCCHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEE
EIDGDRVTFHGAGGPVSGQYEEDGHEVLTYKAGNRGVRFIFEKVSGDEAAPKFIQFSDHR
EECCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEHEEHHCCCCCCCHHEEECCCC
IAPSTSDHYHLYWGNDRAALLQEVTHWPTYYPAELSAEEIVQEMLAH
CCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]