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The map label for this gene is appB [H]

Identifier: 77465043

GI number: 77465043

Start: 62785

End: 63729

Strand: Direct

Name: appB [H]

Synonym: RSP_3030

Alternate gene names: 77465043

Gene position: 62785-63729 (Clockwise)

Preceding gene: 77465041

Following gene: 77465044

Centisome position: 6.66

GC content: 68.47

Gene sequence:

>945_bases
GTGGCAAGCTACCTGTTCAGGCGATTCCTGCTGGCGATGCTGGTTCTGGCCGTCGCGCTGCTGATCCTGTTTTGTCTGGT
CTATGCGGTGCCGGGCGATCCGGCGACCGTTGCCCTCGGCCCGCGGGCCACCGAGGCCCAGAAGATCGCCTTCCGCGAGA
GGATGGGGCTCGATGACCCGATCGTGGTGCAGGCCATCACCTACCTTGGACTGCTGCTGCGCGGCGACATGGGGGTCGAC
CTGCTCAGCCAGCGGCCGGTGGCCGATCTGGTGCTGGCCGCGCTGCCGCGCACAGTGCTGCTGGCGGTGGTGGGACTGGG
CTGGGCGGTGGCCCTCGGCCTGCCGCTGGGCGTCGTCTCGGCCCTGCGGCCCAATACGCTGATCGACCGCATCGTTGGCG
TGATCTCGACCAGTGTCGTGGCCCTGCCGGCCTTTCTCATGGCGATCTATGCGCTGATGCTGTTCTCGGTGACGCTGGGC
TGGTTTCCCGCCATCGGCGCCGGAGAGCCCGGCCATTACGCAAGCCAGGCGCGGCACCTCGTCCTGCCGGCGCTCGCGGT
CGGCATTGCCTGGGTCGGCTATATCGCCCGGCTGGTGCGGGTCTCGATGCTGGAGGTTCTGGCCGAGAACCACGTCCGGA
CCTATCGCGCCTTCGGGGTCTCGGACCTGCGGATTGCGATGCGCTTCGCGCTGCCCATCGCCGTCGCGCCGGTGCTGTCG
GTGATCGGCGTCGGGATGGGCAATCTGCTGTCGGGTGCCGTGCTGGTCGAGGTGGTCTTCGCCCGGCCCGGCCTCGGCGC
GCTGGCCTATGACGCGGTGATCAGCCGCAATTTTCCCGTTCTCTTCGGCTCGGTCGTCGTGACCACCGCGCTCTATGTCA
CCGCCAATTTCCTCGCCGATGCGGCGATCGCCGCGCTCGATCCGCGCGTGGCCAAGGAGAGCTGA

Upstream 100 bases:

>100_bases
CCATGAGGCCTTCATCCCCCTTAGCACGGCCCGAGGTGCTTTCAAATTGAGAATATGCGCACTGATATATCACGAGATGC
ATCAAGAGGGATCGCTCTCC

Downstream 100 bases:

>100_bases
GATGTCCGACCTTCCCCTCGTCCGGCTGCCGGCGGCGTCGCCCGGGATCGCCACAGCTCTGGGGCATCTGCGGACCGTCC
GGCGCAACCCGGTGGGCGCG

Product: ABC peptide/opine transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MASYLFRRFLLAMLVLAVALLILFCLVYAVPGDPATVALGPRATEAQKIAFRERMGLDDPIVVQAITYLGLLLRGDMGVD
LLSQRPVADLVLAALPRTVLLAVVGLGWAVALGLPLGVVSALRPNTLIDRIVGVISTSVVALPAFLMAIYALMLFSVTLG
WFPAIGAGEPGHYASQARHLVLPALAVGIAWVGYIARLVRVSMLEVLAENHVRTYRAFGVSDLRIAMRFALPIAVAPVLS
VIGVGMGNLLSGAVLVEVVFARPGLGALAYDAVISRNFPVLFGSVVVTTALYVTANFLADAAIAALDPRVAKES

Sequences:

>Translated_314_residues
MASYLFRRFLLAMLVLAVALLILFCLVYAVPGDPATVALGPRATEAQKIAFRERMGLDDPIVVQAITYLGLLLRGDMGVD
LLSQRPVADLVLAALPRTVLLAVVGLGWAVALGLPLGVVSALRPNTLIDRIVGVISTSVVALPAFLMAIYALMLFSVTLG
WFPAIGAGEPGHYASQARHLVLPALAVGIAWVGYIARLVRVSMLEVLAENHVRTYRAFGVSDLRIAMRFALPIAVAPVLS
VIGVGMGNLLSGAVLVEVVFARPGLGALAYDAVISRNFPVLFGSVVVTTALYVTANFLADAAIAALDPRVAKES
>Mature_313_residues
ASYLFRRFLLAMLVLAVALLILFCLVYAVPGDPATVALGPRATEAQKIAFRERMGLDDPIVVQAITYLGLLLRGDMGVDL
LSQRPVADLVLAALPRTVLLAVVGLGWAVALGLPLGVVSALRPNTLIDRIVGVISTSVVALPAFLMAIYALMLFSVTLGW
FPAIGAGEPGHYASQARHLVLPALAVGIAWVGYIARLVRVSMLEVLAENHVRTYRAFGVSDLRIAMRFALPIAVAPVLSV
IGVGMGNLLSGAVLVEVVFARPGLGALAYDAVISRNFPVLFGSVVVTTALYVTANFLADAAIAALDPRVAKES

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=34.7266881028939, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=29.7935103244838, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=33.7349397590361, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1789888, Length=317, Percent_Identity=34.0694006309148, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787497, Length=312, Percent_Identity=32.3717948717949, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1787550, Length=270, Percent_Identity=25.5555555555556, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788504, Length=370, Percent_Identity=25.6756756756757, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33122; Mature: 32991

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASYLFRRFLLAMLVLAVALLILFCLVYAVPGDPATVALGPRATEAQKIAFRERMGLDDP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCH
IVVQAITYLGLLLRGDMGVDLLSQRPVADLVLAALPRTVLLAVVGLGWAVALGLPLGVVS
HHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRPNTLIDRIVGVISTSVVALPAFLMAIYALMLFSVTLGWFPAIGAGEPGHYASQARHL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
VLPALAVGIAWVGYIARLVRVSMLEVLAENHVRTYRAFGVSDLRIAMRFALPIAVAPVLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VIGVGMGNLLSGAVLVEVVFARPGLGALAYDAVISRNFPVLFGSVVVTTALYVTANFLAD
HHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AAIAALDPRVAKES
HHHHHHCCHHCCCC
>Mature Secondary Structure 
ASYLFRRFLLAMLVLAVALLILFCLVYAVPGDPATVALGPRATEAQKIAFRERMGLDDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCH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HHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]