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The map label for this gene is ybfI [H]

Identifier: 77461563

GI number: 77461563

Start: 6002350

End: 6003180

Strand: Direct

Name: ybfI [H]

Synonym: Pfl01_5342

Alternate gene names: 77461563

Gene position: 6002350-6003180 (Clockwise)

Preceding gene: 77461562

Following gene: 77461566

Centisome position: 93.23

GC content: 65.34

Gene sequence:

>831_bases
ATGAGCGACCAGGGCGAGTCGATCCGTTTCTGGCAGGCCGCGCCTCTGGCCGGGGTCGAGCTGTTGACCGCGCGCTACAT
CGAGCATCGTTTCGCCCCGCACGTCCACGACGGTTATGTGATCGGCATGATCATGGCCGGCGCCCAGCGCTACCGTTATC
GCGGCGCCGAACACCTGGCGGGCAGCGGTACGCTGGTGCTGATCAATCCGGACGAAGTGCATAACGGCCACAAGGGCACC
GAGGACGGCTGGCTGTACCGGGCGTTTTATCCCGACACCGGGCAGATCGTCGCGCTGTTGAATGAACTGGAACTGCCGAC
CGCACCGATGCCGGCCTTCGGTGCGACGCTGTATCGCGATCCGGATCTGGTCAACGGTTTCTGTCAGTTGCATCGCTTGC
TGGAAAGTCCCGCCACCGCGTTGCAACAGCAAACCGTGTGGCGGGAAATGATGATGCTGCTGTTGCAGCGTCACGCGGCG
GTGCAGATCAACGGCAAGCCCGGCAAAGAGCACCGCGCGGTAGCGATGGCCAAGGAGCTGCTGCACGCGCAACTGGCGGC
GCCGCCTTCACTGGAAGAACTCGCGGCGGCGGTGAATCTCTCGCCTTTCCACTTCGCCCGGGTGTTCCGCCGCGCCACCG
GCATGCCGCCGCACAGTTGGCTGATGCAGCAGCGGATCGCCTGCGCGCGGGGCTTGCTGCAGAGCGGCTGCCTGCCGGTG
GAGGTCGCCACGCAGCTGGGATTTGCCGACCAGAGCCATCTGAGCCGGCAATTCAAACAGGTTTATGGCGTGGGGCCGGC
GGCCTATCGCAGCGCGCGGCTGGATCGCTGA

Upstream 100 bases:

>100_bases
CGGGCATGTCGGCTTCGTCGACGGCACACTCCGCCAGCCGGGTTATTACCTGGAGCGACGGATTCCACAGTGGCTGGCCG
ACGCGGGGCGCGAGTGAGTC

Downstream 100 bases:

>100_bases
GCGATTACTCGCCCGAAGCGATACCGCGCGCAGGATCGTTGATCCATTCGCTCCACGATCCGGCATACAGCGAACCCAAC
GGGTAACCCGCCAGGCACAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSDQGESIRFWQAAPLAGVELLTARYIEHRFAPHVHDGYVIGMIMAGAQRYRYRGAEHLAGSGTLVLINPDEVHNGHKGT
EDGWLYRAFYPDTGQIVALLNELELPTAPMPAFGATLYRDPDLVNGFCQLHRLLESPATALQQQTVWREMMMLLLQRHAA
VQINGKPGKEHRAVAMAKELLHAQLAAPPSLEELAAAVNLSPFHFARVFRRATGMPPHSWLMQQRIACARGLLQSGCLPV
EVATQLGFADQSHLSRQFKQVYGVGPAAYRSARLDR

Sequences:

>Translated_276_residues
MSDQGESIRFWQAAPLAGVELLTARYIEHRFAPHVHDGYVIGMIMAGAQRYRYRGAEHLAGSGTLVLINPDEVHNGHKGT
EDGWLYRAFYPDTGQIVALLNELELPTAPMPAFGATLYRDPDLVNGFCQLHRLLESPATALQQQTVWREMMMLLLQRHAA
VQINGKPGKEHRAVAMAKELLHAQLAAPPSLEELAAAVNLSPFHFARVFRRATGMPPHSWLMQQRIACARGLLQSGCLPV
EVATQLGFADQSHLSRQFKQVYGVGPAAYRSARLDR
>Mature_275_residues
SDQGESIRFWQAAPLAGVELLTARYIEHRFAPHVHDGYVIGMIMAGAQRYRYRGAEHLAGSGTLVLINPDEVHNGHKGTE
DGWLYRAFYPDTGQIVALLNELELPTAPMPAFGATLYRDPDLVNGFCQLHRLLESPATALQQQTVWREMMMLLLQRHAAV
QINGKPGKEHRAVAMAKELLHAQLAAPPSLEELAAAVNLSPFHFARVFRRATGMPPHSWLMQQRIACARGLLQSGCLPVE
VATQLGFADQSHLSRQFKQVYGVGPAAYRSARLDR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30652; Mature: 30520

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQGESIRFWQAAPLAGVELLTARYIEHRFAPHVHDGYVIGMIMAGAQRYRYRGAEHLA
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHCC
GSGTLVLINPDEVHNGHKGTEDGWLYRAFYPDTGQIVALLNELELPTAPMPAFGATLYRD
CCCEEEEECCHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHCCHHHCC
PDLVNGFCQLHRLLESPATALQQQTVWREMMMLLLQRHAAVQINGKPGKEHRAVAMAKEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
LHAQLAAPPSLEELAAAVNLSPFHFARVFRRATGMPPHSWLMQQRIACARGLLQSGCLPV
HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH
EVATQLGFADQSHLSRQFKQVYGVGPAAYRSARLDR
HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure 
SDQGESIRFWQAAPLAGVELLTARYIEHRFAPHVHDGYVIGMIMAGAQRYRYRGAEHLA
CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHCC
GSGTLVLINPDEVHNGHKGTEDGWLYRAFYPDTGQIVALLNELELPTAPMPAFGATLYRD
CCCEEEEECCHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHCCHHHCC
PDLVNGFCQLHRLLESPATALQQQTVWREMMMLLLQRHAAVQINGKPGKEHRAVAMAKEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
LHAQLAAPPSLEELAAAVNLSPFHFARVFRRATGMPPHSWLMQQRIACARGLLQSGCLPV
HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH
EVATQLGFADQSHLSRQFKQVYGVGPAAYRSARLDR
HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]