| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yheT [H]
Identifier: 77461562
GI number: 77461562
Start: 6001348
End: 6002346
Strand: Direct
Name: yheT [H]
Synonym: Pfl01_5341
Alternate gene names: 77461562
Gene position: 6001348-6002346 (Clockwise)
Preceding gene: 77461561
Following gene: 77461563
Centisome position: 93.21
GC content: 64.46
Gene sequence:
>999_bases GTGTCCCCTTCGTCAAAAACGTTCATCCCCGCCTTCGGCCTCGGCAATCCGCACCTGCAAACCTTGTGGGGGCCGCTGTG GCGTAAAACCGTGCACCTTGATCGCCAGCGCGAACGGCTGTGGCTGGACGACGGCGACTTTCTGGATCTGGACTGGTATG GCCCGCACAGTGCCGAGGCGCCATTGGTGCTGGTATTGCACGGGCTGACCGGTTCTTCCAATTCGCCTTACGTGGCCGGA ATCCAGGCAGCGCTCGCCGCGCAAGGCTGGGCCAGTGTTGCGCTGAACTGGCGCGGCTGCTCCGGCGAGCCGAACCTGTT GCCGCGCAGCTACCATTCCGGCGCCAGCGAAGACCTCGCCGAAACCCTCCGCCACCTGAAGGCCAAGCGGCCACTGGCGC CGTTGTATGCGGTCGGCTATTCCCTCGGCGGCAACGTGCTGCTCAAGCATCTGGGGGAAACCGGCAGCGCCAGCGGCGTG CTCGGTGCGGTGGCGGTGTCGGTGCCGTTTCGCCTGGATCAATGTGCCGACCGTATCGGCCAGGGTTTCTCGAAGGTCTA TCAGGCGCACTTCATGCGCGAGATGGTCGCCTACATCAAGAACAAGCAGCGCCAGTTCCAGCACGACGGCCGCGAGGATG GTCTCGCTGCACTGGCGGCCCTCGGCTCGCTGGAAAACATGCGCACCTTCTGGGATTTCGATGGCCGGGTGACCGCGCCT CTGCACGGTTTCGCCGATGCCGAGGATTACTATCGCCGCGCGTCGAGCCGTTACTTTCTCGGCGAGATTCGCACGCCGAC CCTGATCATTCAGGCGGCCGACGACCCGTTCGTGTTCCCCCACAGCCTGCCTTCGGCCAATGAGTTGTCGGCCACGACCC AGTTCGAATTGCAGAATAAGGGCGGGCATGTCGGCTTCGTCGACGGCACACTCCGCCAGCCGGGTTATTACCTGGAGCGA CGGATTCCACAGTGGCTGGCCGACGCGGGGCGCGAGTGA
Upstream 100 bases:
>100_bases CGCGTTGTGGCAACGTATGGCAGTGATCGCCGGTTAACCGACCGGCCTGAAAAAGCGGCGAGTCTCAGCCGAGGCTCGCT GCGCTGCATCGAGAGCAATC
Downstream 100 bases:
>100_bases GTCATGAGCGACCAGGGCGAGTCGATCCGTTTCTGGCAGGCCGCGCCTCTGGCCGGGGTCGAGCTGTTGACCGCGCGCTA CATCGAGCATCGTTTCGCCC
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MSPSSKTFIPAFGLGNPHLQTLWGPLWRKTVHLDRQRERLWLDDGDFLDLDWYGPHSAEAPLVLVLHGLTGSSNSPYVAG IQAALAAQGWASVALNWRGCSGEPNLLPRSYHSGASEDLAETLRHLKAKRPLAPLYAVGYSLGGNVLLKHLGETGSASGV LGAVAVSVPFRLDQCADRIGQGFSKVYQAHFMREMVAYIKNKQRQFQHDGREDGLAALAALGSLENMRTFWDFDGRVTAP LHGFADAEDYYRRASSRYFLGEIRTPTLIIQAADDPFVFPHSLPSANELSATTQFELQNKGGHVGFVDGTLRQPGYYLER RIPQWLADAGRE
Sequences:
>Translated_332_residues MSPSSKTFIPAFGLGNPHLQTLWGPLWRKTVHLDRQRERLWLDDGDFLDLDWYGPHSAEAPLVLVLHGLTGSSNSPYVAG IQAALAAQGWASVALNWRGCSGEPNLLPRSYHSGASEDLAETLRHLKAKRPLAPLYAVGYSLGGNVLLKHLGETGSASGV LGAVAVSVPFRLDQCADRIGQGFSKVYQAHFMREMVAYIKNKQRQFQHDGREDGLAALAALGSLENMRTFWDFDGRVTAP LHGFADAEDYYRRASSRYFLGEIRTPTLIIQAADDPFVFPHSLPSANELSATTQFELQNKGGHVGFVDGTLRQPGYYLER RIPQWLADAGRE >Mature_331_residues SPSSKTFIPAFGLGNPHLQTLWGPLWRKTVHLDRQRERLWLDDGDFLDLDWYGPHSAEAPLVLVLHGLTGSSNSPYVAGI QAALAAQGWASVALNWRGCSGEPNLLPRSYHSGASEDLAETLRHLKAKRPLAPLYAVGYSLGGNVLLKHLGETGSASGVL GAVAVSVPFRLDQCADRIGQGFSKVYQAHFMREMVAYIKNKQRQFQHDGREDGLAALAALGSLENMRTFWDFDGRVTAPL HGFADAEDYYRRASSRYFLGEIRTPTLIIQAADDPFVFPHSLPSANELSATTQFELQNKGGHVGFVDGTLRQPGYYLERR IPQWLADAGRE
Specific function: Unknown
COG id: COG0429
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. AB hydrolase 4 family [H]
Homologues:
Organism=Homo sapiens, GI194578891, Length=332, Percent_Identity=28.9156626506024, Blast_Score=140, Evalue=1e-33, Organism=Homo sapiens, GI23397663, Length=330, Percent_Identity=25.7575757575758, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI23397659, Length=337, Percent_Identity=26.4094955489614, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI23397661, Length=337, Percent_Identity=26.4094955489614, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI269315865, Length=304, Percent_Identity=26.9736842105263, Blast_Score=78, Evalue=1e-14, Organism=Escherichia coli, GI1789752, Length=326, Percent_Identity=43.2515337423313, Blast_Score=246, Evalue=1e-66, Organism=Caenorhabditis elegans, GI17566110, Length=310, Percent_Identity=26.1290322580645, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI71985405, Length=311, Percent_Identity=25.08038585209, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71985413, Length=185, Percent_Identity=27.5675675675676, Blast_Score=73, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6325162, Length=270, Percent_Identity=32.2222222222222, Blast_Score=112, Evalue=9e-26, Organism=Saccharomyces cerevisiae, GI6323866, Length=251, Percent_Identity=28.2868525896414, Blast_Score=110, Evalue=3e-25, Organism=Saccharomyces cerevisiae, GI6319655, Length=285, Percent_Identity=28.0701754385965, Blast_Score=104, Evalue=2e-23, Organism=Drosophila melanogaster, GI281398151, Length=312, Percent_Identity=29.1666666666667, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24652003, Length=312, Percent_Identity=29.1666666666667, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24581365, Length=292, Percent_Identity=26.3698630136986, Blast_Score=89, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012020 - InterPro: IPR000073 - InterPro: IPR000952 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 36632; Mature: 36500
Theoretical pI: Translated: 7.17; Mature: 7.17
Prosite motif: PS01133 UPF0017
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPSSKTFIPAFGLGNPHLQTLWGPLWRKTVHLDRQRERLWLDDGDFLDLDWYGPHSAEA CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCHHCEEECCCCCEEEEECCCCCCCCC PLVLVLHGLTGSSNSPYVAGIQAALAAQGWASVALNWRGCSGEPNLLPRSYHSGASEDLA CEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHH ETLRHLKAKRPLAPLYAVGYSLGGNVLLKHLGETGSASGVLGAVAVSVPFRLDQCADRIG HHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH QGFSKVYQAHFMREMVAYIKNKQRQFQHDGREDGLAALAALGSLENMRTFWDFDGRVTAP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECC LHGFADAEDYYRRASSRYFLGEIRTPTLIIQAADDPFVFPHSLPSANELSATTQFELQNK CCCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCCCEECCCCCCCCCCCCCEEEEEEECC GGHVGFVDGTLRQPGYYLERRIPQWLADAGRE CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure SPSSKTFIPAFGLGNPHLQTLWGPLWRKTVHLDRQRERLWLDDGDFLDLDWYGPHSAEA CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCHHCEEECCCCCEEEEECCCCCCCCC PLVLVLHGLTGSSNSPYVAGIQAALAAQGWASVALNWRGCSGEPNLLPRSYHSGASEDLA CEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHH ETLRHLKAKRPLAPLYAVGYSLGGNVLLKHLGETGSASGVLGAVAVSVPFRLDQCADRIG HHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH QGFSKVYQAHFMREMVAYIKNKQRQFQHDGREDGLAALAALGSLENMRTFWDFDGRVTAP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECC LHGFADAEDYYRRASSRYFLGEIRTPTLIIQAADDPFVFPHSLPSANELSATTQFELQNK CCCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCCCEECCCCCCCCCCCCCEEEEEEECC GGHVGFVDGTLRQPGYYLERRIPQWLADAGRE CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]