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The map label for this gene is rsmD [H]

Identifier: 77461561

GI number: 77461561

Start: 6000676

End: 6001284

Strand: Direct

Name: rsmD [H]

Synonym: Pfl01_5340

Alternate gene names: 77461561

Gene position: 6000676-6001284 (Clockwise)

Preceding gene: 77461560

Following gene: 77461562

Centisome position: 93.2

GC content: 64.37

Gene sequence:

>609_bases
ATGGCCAGTCCAAAGAAACCTGTACAAAAACTGCACAACGGTGTGAACCAGTTGCGCATCATCGGCGGCGAATGGCGCAG
CCGAAAGCTGAGCTTCCCTGATGCGCCGGGTCTGCGCCCGACGCCGGACCGGGTGCGTGAAACCCTGTTCAACTGGCTCG
CGCCGTACGTTGCCGGGGCCAAGATACTCGACCCGTTCGCCGGCAGCGGCGCGCTGTTTCTCGAAGCGCTGTCCCGTGGC
GCGGCCATGGGCCAGGCGCTGGATGCCAGCCACGTCGCGGTCTCCAGCCTGAAAGAACACCTCGGCACCCTGCGCTGCAC
CAACGGCCAGGTGCAGACCGCCGACGCGCTGCGCTACCTGGAAACCCAGACCGCAACCGCGTTCGATCTGGTATTCCTCG
ACCCCCCGTTCAACCAGAACCTGCTGCCAGCGGTGTGCACGCTGCTGGAAGAGCGCCAATGGCTGGCCGATGATTCGTGG
ATCTACACTGAAAGCGAAACCGCGCCATCGACCCTCGGCCTGCCGGGCAACTGGCGCCTGCACCGCGAGCAGAAATCCGG
GCGGGTGTACTACGCGTTGTGGCAACGTATGGCAGTGATCGCCGGTTAA

Upstream 100 bases:

>100_bases
AACTGGTCATCGTCAGCGCTGGCCCGACCGTGCCGCAAAAGCCGTTACCGGCCCCATCTGATAAACCTGCCGAGCAGCCG
CTCGGGGTTCCGGAGCATTA

Downstream 100 bases:

>100_bases
CCGACCGGCCTGAAAAAGCGGCGAGTCTCAGCCGAGGCTCGCTGCGCTGCATCGAGAGCAATCGTGTCCCCTTCGTCAAA
AACGTTCATCCCCGCCTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MASPKKPVQKLHNGVNQLRIIGGEWRSRKLSFPDAPGLRPTPDRVRETLFNWLAPYVAGAKILDPFAGSGALFLEALSRG
AAMGQALDASHVAVSSLKEHLGTLRCTNGQVQTADALRYLETQTATAFDLVFLDPPFNQNLLPAVCTLLEERQWLADDSW
IYTESETAPSTLGLPGNWRLHREQKSGRVYYALWQRMAVIAG

Sequences:

>Translated_202_residues
MASPKKPVQKLHNGVNQLRIIGGEWRSRKLSFPDAPGLRPTPDRVRETLFNWLAPYVAGAKILDPFAGSGALFLEALSRG
AAMGQALDASHVAVSSLKEHLGTLRCTNGQVQTADALRYLETQTATAFDLVFLDPPFNQNLLPAVCTLLEERQWLADDSW
IYTESETAPSTLGLPGNWRLHREQKSGRVYYALWQRMAVIAG
>Mature_201_residues
ASPKKPVQKLHNGVNQLRIIGGEWRSRKLSFPDAPGLRPTPDRVRETLFNWLAPYVAGAKILDPFAGSGALFLEALSRGA
AMGQALDASHVAVSSLKEHLGTLRCTNGQVQTADALRYLETQTATAFDLVFLDPPFNQNLLPAVCTLLEERQWLADDSWI
YTESETAPSTLGLPGNWRLHREQKSGRVYYALWQRMAVIAG

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=194, Percent_Identity=51.0309278350515, Blast_Score=192, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 22344; Mature: 22213

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPKKPVQKLHNGVNQLRIIGGEWRSRKLSFPDAPGLRPTPDRVRETLFNWLAPYVAGA
CCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
KILDPFAGSGALFLEALSRGAAMGQALDASHVAVSSLKEHLGTLRCTNGQVQTADALRYL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEHHHHHHHH
ETQTATAFDLVFLDPPFNQNLLPAVCTLLEERQWLADDSWIYTESETAPSTLGLPGNWRL
HHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEE
HREQKSGRVYYALWQRMAVIAG
EECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ASPKKPVQKLHNGVNQLRIIGGEWRSRKLSFPDAPGLRPTPDRVRETLFNWLAPYVAGA
CCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
KILDPFAGSGALFLEALSRGAAMGQALDASHVAVSSLKEHLGTLRCTNGQVQTADALRYL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEHHHHHHHH
ETQTATAFDLVFLDPPFNQNLLPAVCTLLEERQWLADDSWIYTESETAPSTLGLPGNWRL
HHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEE
HREQKSGRVYYALWQRMAVIAG
EECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]